Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21813 | Soybean | nucleus | 33.83 | 27.95 |
| KRH39187 | Soybean | cytosol, extracellular, nucleus | 34.59 | 25.84 |
| HORVU3Hr1G042790.4 | Barley | nucleus | 41.35 | 16.62 |
| HORVU4Hr1G052330.3 | Barley | nucleus | 41.35 | 16.47 |
| HORVU1Hr1G068220.1 | Barley | nucleus | 40.6 | 15.74 |
| HORVU2Hr1G016580.5 | Barley | nucleus | 39.85 | 15.73 |
| HORVU0Hr1G032230.4 | Barley | nucleus | 38.35 | 14.53 |
| HORVU4Hr1G025130.10 | Barley | nucleus | 37.59 | 13.77 |
| HORVU7Hr1G042180.5 | Barley | nucleus | 37.59 | 13.26 |
| HORVU3Hr1G079010.5 | Barley | nucleus | 47.37 | 13.21 |
| HORVU1Hr1G073870.2 | Barley | nucleus | 39.85 | 10.13 |
| HORVU5Hr1G073410.1 | Barley | nucleus | 42.11 | 9.88 |
| HORVU0Hr1G015710.1 | Barley | nucleus | 33.83 | 9.78 |
| HORVU5Hr1G053330.5 | Barley | nucleus | 36.84 | 9.72 |
| HORVU3Hr1G084340.10 | Barley | nucleus | 33.83 | 7.91 |
| Zm00001d045823_P001 | Maize | cytosol | 15.79 | 6.95 |
| HORVU3Hr1G042830.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 7.52 | 6.71 |
| Os01t0859600-01 | Rice | cytosol | 15.04 | 4.8 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 8.27 | 2.6 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | UniProt:A0A287JJR6 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU2Hr1G116130 | EnsemblPlants:HORVU2Hr1G116130.4 | InterPro:IPR004827 | PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI000B468BD1 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:736943594..736944759
Molecular Weight (calculated)
14992.6 Da
IEP (calculated)
9.531
GRAVY (calculated)
-0.975
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MWSSEPYKVD SGGQATSGSS IMEPDAKFDH AGVHEDPQMD ELETAGDADQ EASKPREKVL RRLAQNREAA RKSRLRKKAY IQQLESSRIK LAQLEQELQR
101: ARQQQGVYGG THAFTWRHLN LQLATLSTGL SKQ
101: ARQQQGVYGG THAFTWRHLN LQLATLSTGL SKQ
001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT
Arabidopsis Description
TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.