Factsheet for HORVU3Hr1G042790.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G003840.1
HORVU0Hr1G032230.4
HORVU1Hr1G068220.1
HORVU2Hr1G016580.5
HORVU3Hr1G019230.6
HORVU3Hr1G042790.4
HORVU3Hr1G042830.1
HORVU3Hr1G079010.5
HORVU3Hr1G106880.5
HORVU4Hr1G052330.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10659709
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10662863
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	12383081
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	15634206
AT5G06960.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G06960.1	HORVU0Hr1G003840.1	AT3G02000.1	19218396
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	17098811
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	17098811
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	17098811
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	17098811
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	21798944
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	21798944
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	21798944
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G190700.2	Wheat	nucleus	99.4	99.1
TraesCS3B01G220400.2	Wheat	nucleus	99.4	99.1
TraesCS3D01G194800.2	Wheat	nucleus	98.79	98.49
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	42.3	93.96
Os01t0279900-01	Rice	nucleus	91.84	92.4
EES02530	Sorghum	nucleus	91.24	91.52
PGSC0003DMT400024428	Potato	nucleus	79.76	81.48
Solyc11g064950.1.1	Tomato	nucleus	79.76	81.48
KRH36324	Soybean	nucleus	80.97	80.72
HORVU4Hr1G052330.3	Barley	nucleus	78.55	77.84
CDY08443	Canola	nucleus	77.34	77.34
Bra034767.1-P	Field mustard	nucleus	77.04	77.04
Solyc01g008730.2.1	Tomato	nucleus	75.83	76.76
Bra001443.1-P	Field mustard	nucleus	76.74	76.74
CDX73830	Canola	nucleus	76.74	76.74
Bra009241.1-P	Field mustard	nucleus	71.6	76.45
CDY00762	Canola	nucleus	76.13	76.13
AT5G06950.5	Thale cress	nucleus	75.83	76.06
HORVU2Hr1G016580.5	Barley	nucleus	76.74	75.37
Bra038705.1-P	Field mustard	nucleus	75.23	74.55
CDY50562	Canola	nucleus	75.23	74.55
CDY52616	Canola	nucleus	74.92	74.47
CDX70053	Canola	nucleus	73.41	74.31
CDX98971	Canola	nucleus	73.41	74.09
PGSC0003DMT400026710	Potato	mitochondrion	39.27	73.86
AT5G06960.1	Thale cress	nucleus	72.51	72.73
CDY05010	Canola	nucleus	71.3	72.39
Bra028713.1-P	Field mustard	nucleus	71.0	72.09
CDY14061	Canola	nucleus	71.0	72.09
Zm00001d008225_P001	Maize	nucleus	90.94	71.67
AT3G12250.4	Thale cress	nucleus	76.44	71.27
KRH66777	Soybean	nucleus	61.33	70.0
CDY42138	Canola	nucleus	66.16	67.59
PGSC0003DMT400060922	Potato	nucleus	51.36	63.43
Solyc10g080780.1.1	Tomato	cytosol	50.76	62.45
VIT_08s0007g05170.t01	Wine grape	nucleus	82.78	60.75
KRG93068	Soybean	nucleus	81.27	60.59
PGSC0003DMT400060926	Potato	nucleus	76.44	58.43
VIT_13s0084g00660.t01	Wine grape	nucleus	82.78	58.42
HORVU7Hr1G042180.5	Barley	nucleus	65.56	57.56
HORVU3Hr1G079010.5	Barley	nucleus	81.57	56.6
KRH20680	Soybean	nucleus	80.06	56.5
Solyc10g080770.1.1	Tomato	nucleus	76.44	56.22
KRG95103	Soybean	nucleus	77.64	55.99
KRH66771	Soybean	nucleus	77.64	55.87
KRH13334	Soybean	nucleus	79.76	53.12
HORVU1Hr1G068220.1	Barley	nucleus	54.38	52.48
HORVU4Hr1G025130.10	Barley	nucleus	54.08	49.31
HORVU2Hr1G116130.4	Barley	nucleus	16.62	41.35
HORVU0Hr1G032230.4	Barley	nucleus	42.9	40.46
HORVU1Hr1G073870.2	Barley	nucleus	51.36	32.5
HORVU0Hr1G015710.1	Barley	nucleus	43.81	31.52
HORVU5Hr1G073410.1	Barley	nucleus	50.15	29.28
HORVU5Hr1G053330.5	Barley	nucleus	44.41	29.17
HORVU2Hr1G116090.2	Barley	cytosol	34.14	26.71
HORVU3Hr1G084340.10	Barley	nucleus	34.44	20.04

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EMBL:AK357239	EMBL:AK359391
ncoils:Coil	UniProt:F2D032	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU3Hr1G042790	EnsemblPlants:HORVU3Hr1G042790.4	InterPro:IPR004827
InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI00020055D3
InterPro:bZIP	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D032]

Coordinates

chrchr3H:-:272679337..272698545

Molecular Weight (calculated)

36825.5 Da

IEP (calculated)

8.227

GRAVY (calculated)

-0.614

Length

331 amino acids

Sequence
(BLAST)

001: MAEASPRTET SDDTDENLML EPGNAALAVA SDSSDRSRDR NGDQKTMRRL AQNREAARKS RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QGIFISSSAD
101: QSHSMSGNGA LAFDTEYARW LEEHNRQVNE LRAAVNAHAG DTELRSVVEK IMSHYDEIFK QKGNAAKADV FHVLSGMWKT PAERCFLWLG GFRPSELLKL
201: LSTQLEPLTE QQLSGICNLQ QSSQQAEDAL SQGMEALQQS LAETLAGSIG SSGSGSTGNV ANYMGQMAMA MGKLGTLENF LRQADNLRQQ TLQQMQRILT
301: TRQSARALLV ISDYSSRLRA LSSLWLARPK E

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.