Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034767.1-P | Field mustard | nucleus | 89.58 | 96.07 |
| CDY08443 | Canola | nucleus | 89.01 | 95.47 |
| CDY50562 | Canola | nucleus | 89.3 | 94.91 |
| Bra038705.1-P | Field mustard | nucleus | 89.3 | 94.91 |
| Bra001443.1-P | Field mustard | nucleus | 88.17 | 94.56 |
| CDX73830 | Canola | nucleus | 88.17 | 94.56 |
| CDY52616 | Canola | nucleus | 88.45 | 94.29 |
| CDY00762 | Canola | nucleus | 87.89 | 94.26 |
| AT5G06950.5 | Thale cress | nucleus | 86.2 | 92.73 |
| CDY42138 | Canola | nucleus | 78.59 | 86.11 |
| AT5G06960.1 | Thale cress | nucleus | 77.75 | 83.64 |
| KRH36324 | Soybean | nucleus | 74.65 | 79.82 |
| Os01t0279900-01 | Rice | nucleus | 73.8 | 79.64 |
| GSMUA_Achr8P05800_001 | Banana | nucleus | 74.37 | 79.52 |
| GSMUA_Achr3P25020_001 | Banana | nucleus | 73.8 | 78.92 |
| Solyc11g064950.1.1 | Tomato | nucleus | 71.83 | 78.7 |
| PGSC0003DMT400024428 | Potato | nucleus | 71.83 | 78.7 |
| EES02530 | Sorghum | nucleus | 71.55 | 76.97 |
| TraesCS3A01G190700.2 | Wheat | nucleus | 71.55 | 76.51 |
| TraesCS3B01G220400.2 | Wheat | nucleus | 71.55 | 76.51 |
| HORVU3Hr1G042790.4 | Barley | nucleus | 71.27 | 76.44 |
| TraesCS3D01G194800.2 | Wheat | nucleus | 70.99 | 75.9 |
| Solyc01g008730.2.1 | Tomato | nucleus | 69.58 | 75.54 |
| Os07t0687700-01 | Rice | nucleus | 70.42 | 74.85 |
| KXG39494 | Sorghum | nucleus | 70.42 | 74.63 |
| Os03t0318600-01 | Rice | nucleus | 69.86 | 74.47 |
| KXG36997 | Sorghum | nucleus | 69.3 | 73.87 |
| TraesCS4B01G178600.1 | Wheat | nucleus | 69.01 | 73.35 |
| HORVU4Hr1G052330.3 | Barley | nucleus | 69.01 | 73.35 |
| Zm00001d022542_P002 | Maize | nucleus | 68.73 | 73.27 |
| TraesCS4D01G180200.4 | Wheat | nucleus | 69.01 | 73.13 |
| TraesCS4A01G126300.2 | Wheat | nucleus | 69.01 | 73.13 |
| TraesCS2B01G113200.2 | Wheat | nucleus | 69.01 | 72.92 |
| TraesCS2D01G096800.2 | Wheat | nucleus | 69.01 | 72.92 |
| TraesCS2A01G097500.2 | Wheat | nucleus | 68.73 | 72.62 |
| HORVU3Hr1G042830.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 30.14 | 71.81 |
| PGSC0003DMT400026710 | Potato | mitochondrion | 34.93 | 70.45 |
| HORVU2Hr1G016580.5 | Barley | nucleus | 66.2 | 69.73 |
| KXG22247 | Sorghum | nucleus | 60.0 | 64.16 |
| Os05t0492000-00 | Rice | nucleus | 58.31 | 62.73 |
| Zm00001d008225_P001 | Maize | nucleus | 71.55 | 60.48 |
| Zm00001d010658_P001 | Maize | nucleus | 58.59 | 60.29 |
| KRG93068 | Soybean | nucleus | 74.65 | 59.68 |
| Zm00001d028936_P001 | Maize | nucleus | 63.66 | 57.8 |
| VIT_13s0084g00660.t01 | Wine grape | nucleus | 75.77 | 57.36 |
| KRH20680 | Soybean | nucleus | 75.21 | 56.93 |
| GSMUA_Achr10P... | Banana | nucleus | 73.24 | 56.89 |
| TraesCS1A01G096300.1 | Wheat | nucleus | 53.24 | 56.42 |
| TraesCS1B01G127400.1 | Wheat | nucleus | 53.52 | 55.88 |
| GSMUA_Achr11P... | Banana | nucleus | 74.08 | 55.02 |
| TraesCS1D01G105300.1 | Wheat | nucleus | 52.39 | 54.87 |
| TraesCS3A01G334100.1 | Wheat | nucleus | 72.39 | 54.11 |
| HORVU3Hr1G079010.5 | Barley | nucleus | 72.68 | 54.09 |
| EES03778 | Sorghum | nucleus | 70.99 | 53.85 |
| TraesCS3D01G327600.1 | Wheat | nucleus | 71.83 | 53.46 |
| TraesCS3B01G365100.1 | Wheat | nucleus | 71.55 | 53.25 |
| KRH13334 | Soybean | nucleus | 74.37 | 53.12 |
| HORVU1Hr1G068220.1 | Barley | nucleus | 48.73 | 50.44 |
| Zm00001d043153_P001 | Maize | nucleus | 57.46 | 48.34 |
| AT5G10030.3 | Thale cress | nucleus | 49.01 | 47.8 |
| AT1G68640.1 | Thale cress | nucleus | 60.56 | 47.57 |
| AT1G77920.1 | Thale cress | nucleus | 48.17 | 46.47 |
| AT5G65210.2 | Thale cress | nucleus | 47.89 | 46.2 |
| Zm00001d012553_P003 | Maize | nucleus | 61.13 | 46.17 |
| AT1G22070.1 | Thale cress | nucleus | 47.32 | 43.75 |
| Os01t0808100-01 | Rice | nucleus | 42.82 | 41.76 |
| HORVU0Hr1G032230.4 | Barley | nucleus | 39.44 | 39.89 |
| AT5G06839.3 | Thale cress | nucleus | 50.99 | 39.35 |
| AT1G08320.4 | Thale cress | nucleus | 52.39 | 38.67 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | MapMan:26.8.3.1.2 | EntrezGene:820405 | ProteinID:AEE75175.1 |
| ArrayExpress:AT3G12250 | EnsemblPlantsGene:AT3G12250 | RefSeq:AT3G12250 | TAIR:AT3G12250 | RefSeq:AT3G12250-TAIR-G | EnsemblPlants:AT3G12250.4 |
| TAIR:AT3G12250.4 | Unigene:At.70207 | ncoils:Coil | UniProt:F4J8P7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR004827 |
| InterPro:IPR025422 | RefSeq:NP_001030678.1 | PFAM:PF00170 | PFAM:PF14144 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF244 | SMART:SM00338 | SUPFAM:SSF57959 | Symbol:TGA6 | InterPro:TGA_domain | UniParc:UPI000016338F |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
Coordinates
chr3:+:3906351..3908583
Molecular Weight (calculated)
39719.0 Da
IEP (calculated)
9.283
GRAVY (calculated)
-0.579
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTSSRTDV STDGDTDHRD LGFYYLYNVT PGRLVPESLG KTWGILPSDR GHMHAAASDS SDRSKDKLDQ KTLRRLAQNR EAARKSRLRK KAYVQQLENS
101: RLKLTQLEQE LQRARQQGVF ISSSGDQAHS TGGNGALAFD AEHSRWLEEK NRQMNELRSA LNAHAGDTEL RIIVDGVMAH YEELFRIKSN AAKNDVFHLL
201: SGMWKTPAER CFLWLGGFRS SELLKLLANQ LEPMTERQVM GINSLQQTSQ QAEDALSQGM ESLQQSLADT LSSGTLGSSS SDNVASYMGQ MAMAMGQLGT
301: LEGFIRQADN LRLQTLQQML RVLTTRQSAR ALLAIHDYSS RLRALSSLWL ARPRE
101: RLKLTQLEQE LQRARQQGVF ISSSGDQAHS TGGNGALAFD AEHSRWLEEK NRQMNELRSA LNAHAGDTEL RIIVDGVMAH YEELFRIKSN AAKNDVFHLL
201: SGMWKTPAER CFLWLGGFRS SELLKLLANQ LEPMTERQVM GINSLQQTSQ QAEDALSQGM ESLQQSLADT LSSGTLGSSS SDNVASYMGQ MAMAMGQLGT
301: LEGFIRQADN LRLQTLQQML RVLTTRQSAR ALLAIHDYSS RLRALSSLWL ARPRE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.