CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93068
KRG94592
KRH01571
KRH06898
KRH13334
KRH20680
KRH36324
KRH37416
KRH66789
KRH70543
KRH72058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	KRH37416	AT1G64280.1	10659709
AT5G06960.1	KRH37416	AT1G64280.1	10662863
AT5G06960.1	KRH37416	AT1G64280.1	12383081
AT5G06960.1	KRH37416	AT1G64280.1	15634206
AT5G06960.1	KRH66789	AT2G41370.1	21798944
AT5G06960.1	KRH72058	AT2G41370.1	21798944
AT5G06960.1	KRG94592	AT3G02000.1	19218396
AT5G06960.1	KRH01571	AT3G02000.1	19218396
AT5G06960.1	KRH06898	AT3G02000.1	19218396
AT5G06960.1	KRH70543	AT3G02000.1	19218396
AT5G06960.1	KRG93068	AT5G06960.1	17098811
AT5G06960.1	KRH13334	AT5G06960.1	17098811
AT5G06960.1	KRH20680	AT5G06960.1	17098811
AT5G06960.1	KRH36324	AT5G06960.1	17098811
AT5G06960.1	KRG93068	AT5G06960.1	21798944
AT5G06960.1	KRH13334	AT5G06960.1	21798944
AT5G06960.1	KRH20680	AT5G06960.1	21798944
AT5G06960.1	KRH36324	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36324	Soybean	nucleus	73.2	97.89
PGSC0003DMT400024428	Potato	nucleus	63.96	87.65
Solyc11g064950.1.1	Tomato	nucleus	63.96	87.65
GSMUA_Achr3P25020_001	Banana	nucleus	63.29	84.64
GSMUA_Achr8P05800_001	Banana	nucleus	62.61	83.73
Os01t0279900-01	Rice	nucleus	61.26	82.67
Solyc01g008730.2.1	Tomato	nucleus	60.81	82.57
Os03t0318600-01	Rice	nucleus	61.71	82.28
TraesCS3A01G190700.2	Wheat	nucleus	61.26	81.93
TraesCS3B01G220400.2	Wheat	nucleus	61.26	81.93
KXG39494	Sorghum	nucleus	61.71	81.79
EES02530	Sorghum	nucleus	60.59	81.52
TraesCS3D01G194800.2	Wheat	nucleus	60.81	81.33
HORVU3Hr1G042790.4	Barley	nucleus	60.59	81.27
TraesCS4B01G178600.1	Wheat	nucleus	60.59	80.54
HORVU4Hr1G052330.3	Barley	nucleus	60.59	80.54
CDY08443	Canola	nucleus	59.91	80.36
TraesCS4A01G126300.2	Wheat	nucleus	60.59	80.3
TraesCS4D01G180200.4	Wheat	nucleus	60.59	80.3
Bra034767.1-P	Field mustard	nucleus	59.68	80.06
TraesCS2B01G113200.2	Wheat	nucleus	60.59	80.06
AT5G06950.5	Thale cress	nucleus	59.46	80.0
TraesCS2D01G096800.2	Wheat	nucleus	60.36	79.76
Zm00001d022542_P002	Maize	nucleus	59.68	79.58
KRH20680	Soybean	nucleus	84.01	79.53
TraesCS2A01G097500.2	Wheat	nucleus	60.14	79.46
Os07t0687700-01	Rice	nucleus	59.68	79.34
KXG36997	Sorghum	nucleus	59.46	79.28
CDY52616	Canola	nucleus	59.01	78.68
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	26.35	78.52
Bra038705.1-P	Field mustard	nucleus	59.01	78.44
CDY50562	Canola	nucleus	59.01	78.44
Bra009241.1-P	Field mustard	nucleus	54.73	78.39
CDX73830	Canola	nucleus	58.11	77.95
Bra001443.1-P	Field mustard	nucleus	58.11	77.95
CDY00762	Canola	nucleus	57.88	77.64
CDX70053	Canola	nucleus	56.98	77.37
AT5G06960.1	Thale cress	nucleus	57.43	77.27
CDX98971	Canola	nucleus	56.98	77.13
PGSC0003DMT400026710	Potato	mitochondrion	30.18	76.14
HORVU2Hr1G016580.5	Barley	nucleus	57.66	75.96
VIT_13s0084g00660.t01	Wine grape	nucleus	80.18	75.91
CDY14061	Canola	nucleus	55.63	75.77
Bra028713.1-P	Field mustard	nucleus	55.63	75.77
CDY05010	Canola	nucleus	55.41	75.46
AT3G12250.4	Thale cress	nucleus	59.68	74.65
KRH13334	Soybean	nucleus	81.53	72.84
KRH66777	Soybean	nucleus	47.3	72.41
CDY42138	Canola	nucleus	51.35	70.37
GSMUA_Achr10P...	Banana	nucleus	70.72	68.71
KXG22247	Sorghum	nucleus	50.23	67.17
Zm00001d008225_P001	Maize	nucleus	62.61	66.19
KRG95103	Soybean	nucleus	68.24	66.01
KRH66771	Soybean	nucleus	68.24	65.87
EES03778	Sorghum	nucleus	68.92	65.38
GSMUA_Achr11P...	Banana	nucleus	69.14	64.23
Os05t0492000-00	Rice	nucleus	47.52	63.94
Zm00001d028936_P001	Maize	nucleus	55.63	63.17
HORVU3Hr1G079010.5	Barley	nucleus	66.44	61.84
TraesCS3A01G334100.1	Wheat	nucleus	65.99	61.68
TraesCS3B01G365100.1	Wheat	nucleus	65.77	61.22
TraesCS1A01G096300.1	Wheat	nucleus	46.17	61.19
TraesCS3D01G327600.1	Wheat	nucleus	65.54	61.01
TraesCS1B01G127400.1	Wheat	nucleus	46.17	60.29
Zm00001d010658_P001	Maize	nucleus	46.85	60.29
TraesCS1D01G105300.1	Wheat	nucleus	45.95	60.18
Zm00001d043153_P001	Maize	nucleus	56.76	59.72
Zm00001d012553_P003	Maize	nucleus	60.59	57.23
HORVU1Hr1G068220.1	Barley	nucleus	42.57	55.1
KRH35977	Soybean	nucleus	56.53	55.04
KRG90784	Soybean	nucleus	55.63	54.29
KRH63045	Soybean	cytosol	11.49	54.26
Os01t0808100-01	Rice	nucleus	43.47	53.02
KRG97639	Soybean	nucleus	43.02	52.76
KRH31239	Soybean	nucleus	42.57	51.92
KRH70569	Soybean	nucleus	53.6	50.96
KRH75411	Soybean	nucleus	55.18	50.41
KRH59415	Soybean	nucleus	41.22	49.46
KRH53141	Soybean	nucleus	38.51	48.17
KRH43266	Soybean	nucleus	40.99	48.02
KRH21813	Soybean	nucleus	17.34	47.83
KRH64780	Soybean	nucleus	37.39	45.86
KRH18838	Soybean	nucleus	37.16	44.59
KRH16629	Soybean	nucleus	36.71	44.05
HORVU0Hr1G032230.4	Barley	nucleus	34.01	43.02
KRH67029	Soybean	nucleus	47.3	42.77
KRH39187	Soybean	cytosol, extracellular, nucleus	17.12	42.7
KRG95350	Soybean	nucleus	47.07	42.57
KRG92164	Soybean	nucleus	22.07	41.7
KRH71904	Soybean	nucleus	45.27	41.53
KRH26635	Soybean	nucleus	43.92	39.96
KRH22685	Soybean	nucleus	43.92	39.8
KRH34622	Soybean	cytosol	20.5	39.39
KRH30432	Soybean	nucleus	43.24	38.95
KRH25227	Soybean	nucleus	43.92	38.92
KRH32997	Soybean	nucleus	44.82	38.49

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100816123	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EMBL:ACUP02012779
ncoils:Coil	EnsemblPlantsGene:GLYMA_20G246400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1NJB9	InterPro:IPR004827	InterPro:IPR025422
EnsemblPlants:KRG93068	ProteinID:KRG93068	ProteinID:KRG93068.1	PFAM:PF07716	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI000233DE89	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:-:47644350..47649516

Molecular Weight (calculated)

49508.2 Da

IEP (calculated)

6.198

GRAVY (calculated)

-0.537

Length

444 amino acids

Sequence
(BLAST)

001: MPSFDSQLPN SNACYTEGSA IDSFCVFDFD QSVGYRIEDC VALRGNSVFD SLKVSSQTIS RGPVEVDSFD KLPTSLNKNP LTSQTERQRL QLQKVQLSNL
101: VSGDTEHQEE SAMADASPRT DISTDVDTDD KNPRFDRSQS LVAVVSDSSD RSKDKSDQKT LRRLAQNREA ARKSRLRKKA YVQQLESSRL KLTQLEQELQ
201: RARQQGIIIS NSGDQAHSMS GNGAMAFDVE YARWLEEQNR QVNELRAAVN SHAGDTELRM IIDGIMAHYD EIFRLKADAA KADVFHLLSG MWKTPAERCF
301: LWLGGFRSSE LLKLLVNQLE PLTEQQLVGI TNLQQSSQQA EDALSQGMEA LQQSLSETLS TGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIKQADNL
401: RQQTLQQIHR ILTTRQSARA LLAIHDYFSR LRALSSLWLA RPRD

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.