Factsheet for Os03t0318600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0194300-01
Os01t0279900-01
Os01t0808100-01
Os01t0948900-01
Os02t0512400-01
Os03t0318600-01
Os04t0393500-01
Os05t0492000-00
Os07t0687700-01
Os11t0141900-00
Os12t0138500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	Os01t0194300-01	AT1G64280.1	10659709
AT5G06960.1	Os01t0194300-01	AT1G64280.1	10662863
AT5G06960.1	Os01t0194300-01	AT1G64280.1	12383081
AT5G06960.1	Os01t0194300-01	AT1G64280.1	15634206
AT5G06960.1	Os01t0948900-01	AT2G41370.1	21798944
AT5G06960.1	Os11t0141900-00	AT2G41370.1	21798944
AT5G06960.1	Os12t0138500-01	AT2G41370.1	21798944
AT5G06960.1	Os02t0512400-01	AT3G02000.1	19218396
AT5G06960.1	Os04t0393500-01	AT3G02000.1	19218396
AT5G06960.1	Os01t0279900-01	AT5G06960.1	17098811
AT5G06960.1	Os01t0808100-01	AT5G06960.1	17098811
AT5G06960.1	Os03t0318600-01	AT5G06960.1	17098811
AT5G06960.1	Os05t0492000-00	AT5G06960.1	17098811
AT5G06960.1	Os07t0687700-01	AT5G06960.1	17098811
AT5G06960.1	Os01t0279900-01	AT5G06960.1	21798944
AT5G06960.1	Os01t0808100-01	AT5G06960.1	21798944
AT5G06960.1	Os03t0318600-01	AT5G06960.1	21798944
AT5G06960.1	Os05t0492000-00	AT5G06960.1	21798944
AT5G06960.1	Os07t0687700-01	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39494	Sorghum	nucleus	94.89	94.33
TraesCS4D01G180200.4	Wheat	nucleus	94.29	93.73
TraesCS4A01G126300.2	Wheat	nucleus	94.29	93.73
HORVU4Hr1G052330.3	Barley	nucleus	93.99	93.71
TraesCS4B01G178600.1	Wheat	nucleus	93.99	93.71
Os07t0687700-01	Rice	nucleus	90.69	90.42
KRH36324	Soybean	nucleus	82.58	82.83
PGSC0003DMT400024428	Potato	nucleus	79.88	82.1
Solyc11g064950.1.1	Tomato	nucleus	79.88	82.1
Os01t0279900-01	Rice	nucleus	79.88	80.85
Solyc01g008730.2.1	Tomato	nucleus	76.28	77.68
PGSC0003DMT400026710	Potato	mitochondrion	39.94	75.57
AT5G06950.5	Thale cress	nucleus	74.77	75.45
CDY08443	Canola	nucleus	74.77	75.23
Bra034767.1-P	Field mustard	nucleus	74.47	74.92
CDX73830	Canola	nucleus	73.87	74.32
Bra001443.1-P	Field mustard	nucleus	73.87	74.32
Bra009241.1-P	Field mustard	nucleus	69.07	74.19
CDY00762	Canola	nucleus	73.57	74.02
CDY50562	Canola	nucleus	74.17	73.95
Bra038705.1-P	Field mustard	nucleus	74.17	73.95
CDY52616	Canola	nucleus	73.87	73.87
CDX70053	Canola	nucleus	71.47	72.78
CDX98971	Canola	nucleus	71.47	72.56
AT5G06960.1	Thale cress	nucleus	71.77	72.42
Zm00001d028936_P001	Maize	nucleus	83.78	71.36
CDY05010	Canola	nucleus	69.37	70.86
Bra028713.1-P	Field mustard	nucleus	69.07	70.55
CDY14061	Canola	nucleus	69.07	70.55
AT3G12250.4	Thale cress	nucleus	74.47	69.86
KRH66777	Soybean	nucleus	60.06	68.97
CDY42138	Canola	nucleus	63.96	65.74
PGSC0003DMT400060922	Potato	nucleus	51.35	63.81
Solyc10g080780.1.1	Tomato	cytosol	51.35	63.57
KRG93068	Soybean	nucleus	82.28	61.71
Os05t0492000-00	Rice	nucleus	60.96	61.52
Os10t0566200-00	Rice	extracellular	21.62	61.02
VIT_08s0007g05170.t01	Wine grape	nucleus	81.38	60.09
VIT_13s0084g00660.t01	Wine grape	nucleus	84.08	59.7
PGSC0003DMT400060926	Potato	nucleus	75.68	58.2
KRH20680	Soybean	nucleus	81.38	57.78
Os06t0265400-01	Rice	nucleus	65.47	56.62
Solyc10g080770.1.1	Tomato	nucleus	75.68	56.0
KRG95103	Soybean	nucleus	76.88	55.77
KRH66771	Soybean	nucleus	76.58	55.43
KRH13334	Soybean	nucleus	81.38	54.53
Os01t0882200-00	Rice	cytosol, extracellular	22.22	52.11
GSMUA_Achr8P21670_001	Banana	nucleus	80.78	46.22
Os01t0808100-01	Rice	nucleus	46.55	42.58
Os04t0637000-01	Rice	nucleus	49.55	41.56
Os11t0152700-01	Rice	nucleus	57.96	39.88
Os12t0152900-01	Rice	nucleus	56.16	38.24
Os09t0280500-01	Rice	nucleus	49.55	35.33
Os05t0443900-01	Rice	nucleus	50.75	34.92
Os08t0176900-01	Rice	nucleus	39.94	34.19
Os06t0614100-01	Rice	nucleus	45.95	33.92
Os01t0859500-01	Rice	nucleus	53.15	32.84
Os09t0489500-02	Rice	nucleus	51.35	32.7
Os02t0194900-00	Rice	nucleus	35.74	31.9
Os01t0859600-01	Rice	cytosol	17.42	13.91

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EntrezGene:4332660	EMBL:AB051294
ProteinID:ABF95638.1	ProteinID:ABF95639.1	ProteinID:ABF95640.1	ProteinID:ABF95641.1	EMBL:AK242257	EMBL:AY620414
ProteinID:BAF11859.1	ProteinID:BAS83919.1	ncoils:Coil	ProteinID:EEE58954.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EMBL:HM991173	InterPro:IPR004827	InterPro:IPR025422	EnsemblPlantsGene:Os03g0318600	EnsemblPlants:Os03t0318600-01	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF220
UniProt:Q6IVC3	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000014F2CE	RefSeq:XP_015632465.1
RefSeq:XP_015632466.1	RefSeq:XP_015632467.1	InterPro:bZIP	SEG:seg	:	:

Description

b-ZIP TRANSCRIPTION FACTOR 28Similar to Transcription factor HBP-1b(C38) (Fragment). (Os03t0318600-01)

Coordinates

chr3:-:11476096..11481187

Molecular Weight (calculated)

37072.1 Da

IEP (calculated)

8.941

GRAVY (calculated)

-0.486

Length

333 amino acids

Sequence
(BLAST)

001: MADASSRTDT STVLDTDDKN QMVDGQSGAI VPSNSSDRSD RSDKPMDQKV LRRLAQNREA ARKSRLRKKA YVQQLESSKL KLASLEQEIN KARQQGIYIS
101: SSGDQTHAMS GNGAMTFDLE YARWLEEQNK QINELRTAVN AHASDSDLRL IVDGIMAHYD EIFRLKGVAA KADVFHILSG MWKTPAERCF LWLGGFRSSE
201: LLKLLVNQLE PLTEQQLLGL SNLQQSSQQA EDALSQGMEA LQQSLADTLA GSLGPSGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR QQTLHQMQRI
301: LTIRQAARAL LAIHDYFSRL RALSSLWLAR PRE

Best Arabidopsis Sequence Match ( AT5G06950.2 )
(BLAST)

001: MADTSPRTDV STDDDTDHPD LGSEGALVNT AASDSSDRSK GKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISGTG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNKQMN ELRSALNAHA GDSELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQLMGINNL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT
301: RQSARALLAI HDYFSRLRAL SSLWLARPRE

Arabidopsis Description

TGA2BZIP transcription factor TGA2 [Source:UniProtKB/TrEMBL;Acc:B2BDR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.