Factsheet for Solyc11g064950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008730.2.1
Solyc01g009890.1.1
Solyc01g009900.2.1
Solyc01g009910.1.1
Solyc04g040220.2.1
Solyc05g015910.1.1
Solyc05g018160.1.1
Solyc07g040690.2.1
Solyc10g079460.1.1
Solyc10g079750.1.1
Solyc11g064950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	Solyc07g040690.2.1	AT1G64280.1	10659709
AT5G06960.1	Solyc07g040690.2.1	AT1G64280.1	10662863
AT5G06960.1	Solyc07g040690.2.1	AT1G64280.1	12383081
AT5G06960.1	Solyc07g040690.2.1	AT1G64280.1	15634206
AT5G06960.1	Solyc04g040220.2.1	AT2G41370.1	21798944
AT5G06960.1	Solyc05g018160.1.1	AT2G41370.1	21798944
AT5G06960.1	Solyc10g079460.1.1	AT2G41370.1	21798944
AT5G06960.1	Solyc10g079750.1.1	AT2G41370.1	21798944
AT5G06960.1	Solyc01g009890.1.1	AT3G02000.1	19218396
AT5G06960.1	Solyc01g009900.2.1	AT3G02000.1	19218396
AT5G06960.1	Solyc01g009910.1.1	AT3G02000.1	19218396
AT5G06960.1	Solyc05g015910.1.1	AT3G02000.1	19218396
AT5G06960.1	Solyc01g008730.2.1	AT5G06960.1	17098811
AT5G06960.1	Solyc11g064950.1.1	AT5G06960.1	17098811
AT5G06960.1	Solyc01g008730.2.1	AT5G06960.1	21798944
AT5G06960.1	Solyc11g064950.1.1	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024428	Potato	nucleus	100.0	100.0
Solyc01g008730.2.1	Tomato	nucleus	88.27	87.46
KRH36324	Soybean	nucleus	87.35	85.24
GSMUA_Achr8P05800_001	Banana	nucleus	85.49	83.43
GSMUA_Achr3P25020_001	Banana	nucleus	85.19	83.13
Os01t0279900-01	Rice	nucleus	83.33	82.07
PGSC0003DMT400026710	Potato	mitochondrion	44.14	81.25
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	37.35	81.21
EES02530	Sorghum	nucleus	81.48	80.0
Os03t0318600-01	Rice	nucleus	82.1	79.88
HORVU3Hr1G042790.4	Barley	nucleus	81.48	79.76
KXG36997	Sorghum	nucleus	81.79	79.58
TraesCS3D01G194800.2	Wheat	nucleus	81.48	79.52
TraesCS3B01G220400.2	Wheat	nucleus	81.48	79.52
TraesCS3A01G190700.2	Wheat	nucleus	81.48	79.52
KXG39494	Sorghum	nucleus	82.1	79.4
Zm00001d022542_P002	Maize	nucleus	81.48	79.28
TraesCS4D01G180200.4	Wheat	nucleus	81.17	78.51
TraesCS4A01G126300.2	Wheat	nucleus	81.17	78.51
AT5G06950.5	Thale cress	nucleus	79.94	78.48
TraesCS4B01G178600.1	Wheat	nucleus	80.86	78.44
HORVU4Hr1G052330.3	Barley	nucleus	80.86	78.44
Os07t0687700-01	Rice	nucleus	80.56	78.14
Bra009241.1-P	Field mustard	nucleus	74.69	78.06
CDY08443	Canola	nucleus	79.63	77.95
Bra034767.1-P	Field mustard	nucleus	79.32	77.64
TraesCS2D01G096800.2	Wheat	nucleus	79.94	77.08
TraesCS2B01G113200.2	Wheat	nucleus	79.94	77.08
TraesCS2A01G097500.2	Wheat	nucleus	79.63	76.79
CDX70053	Canola	nucleus	77.16	76.45
CDX98971	Canola	nucleus	77.16	76.22
AT5G06960.1	Thale cress	nucleus	77.47	76.06
CDY50562	Canola	nucleus	78.09	75.75
Bra038705.1-P	Field mustard	nucleus	78.09	75.75
CDY52616	Canola	nucleus	77.78	75.68
Bra001443.1-P	Field mustard	nucleus	76.85	75.23
CDX73830	Canola	nucleus	76.85	75.23
CDY00762	Canola	nucleus	76.54	74.92
HORVU2Hr1G016580.5	Barley	nucleus	77.78	74.78
Bra028713.1-P	Field mustard	nucleus	73.77	73.31
CDY14061	Canola	nucleus	73.77	73.31
CDY05010	Canola	nucleus	73.46	73.01
AT3G12250.4	Thale cress	nucleus	78.7	71.83
CDY42138	Canola	nucleus	68.21	68.21
KXG22247	Sorghum	nucleus	67.28	65.66
Solyc10g080780.1.1	Tomato	cytosol	53.7	64.68
KRG93068	Soybean	nucleus	87.65	63.96
Os05t0492000-00	Rice	nucleus	65.12	63.94
Zm00001d008225_P001	Maize	nucleus	81.79	63.1
Zm00001d028936_P001	Maize	nucleus	74.69	61.89
VIT_13s0084g00660.t01	Wine grape	nucleus	89.51	61.83
GSMUA_Achr10P...	Banana	nucleus	85.19	60.39
Zm00001d010658_P001	Maize	nucleus	63.58	59.71
TraesCS1A01G096300.1	Wheat	nucleus	61.11	59.1
KRH20680	Soybean	nucleus	85.19	58.85
TraesCS1D01G105300.1	Wheat	nucleus	61.11	58.41
GSMUA_Achr11P...	Banana	nucleus	85.49	57.95
TraesCS1B01G127400.1	Wheat	nucleus	60.8	57.94
EES03778	Sorghum	nucleus	82.1	56.84
Solyc10g080770.1.1	Tomato	nucleus	78.4	56.44
TraesCS3A01G334100.1	Wheat	nucleus	81.48	55.58
TraesCS3B01G365100.1	Wheat	nucleus	81.79	55.56
TraesCS3D01G327600.1	Wheat	nucleus	81.48	55.35
HORVU3Hr1G079010.5	Barley	nucleus	81.17	55.14
KRH13334	Soybean	nucleus	84.57	55.13
HORVU1Hr1G068220.1	Barley	nucleus	57.41	54.23
Zm00001d043153_P001	Maize	nucleus	66.36	50.95
Solyc12g056860.1.1	Tomato	nucleus	53.7	50.0
Solyc11g068370.1.1	Tomato	nucleus	57.1	49.73
Zm00001d012553_P003	Maize	nucleus	70.99	48.94
Solyc04g011670.2.1	Tomato	nucleus	56.48	48.93
Solyc05g009660.2.1	Tomato	nucleus	71.91	48.14
Solyc04g072460.2.1	Tomato	nucleus	52.16	46.81
Solyc04g054320.2.1	Tomato	nucleus	53.09	46.49
Os01t0808100-01	Rice	nucleus	47.84	42.58
HORVU0Hr1G032230.4	Barley	nucleus	44.75	41.31
Solyc06g074320.2.1	Tomato	nucleus	60.49	39.12
Solyc10g080410.1.1	Tomato	nucleus	55.25	39.0
Solyc10g078670.1.1	Tomato	nucleus	56.17	37.37

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	UniProt:K4D9A8	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338	SUPFAM:SSF57959
EnsemblPlantsGene:Solyc11g064950.1	EnsemblPlants:Solyc11g064950.1.1	InterPro:TGA_domain	UniParc:UPI00027697FF	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chr11:-:50262574..50269191

Molecular Weight (calculated)

36173.0 Da

IEP (calculated)

9.082

GRAVY (calculated)

-0.498

Length

324 amino acids

Sequence
(BLAST)

001: MADISPSTST DADTEDKNRF LNQQLCAVAS DGSDRPKDQK TLRRLAQNRE AARKSRLRKK AYVQQLESSR MKLTQLEQEL QRARQQGIFI SGSGDQSQSM
101: SGNGALAFDV EYARWLEEQN RRINELRGAV NSHAGDAELR IIVDGILAHY DDIFRIKGDA AKADVFHILS GMWKTPAERC FLWLGGFRSS ELLKLLINQL
201: EPLTEQQLLA INNLQQSSQQ AEDALSQGME ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL EGFIRQADNL RQQTLQQMHR ILTTRQSARA
301: LLAITDYFSR LRALSSLWLA RPRE

Best Arabidopsis Sequence Match ( AT5G06950.2 )
(BLAST)

001: MADTSPRTDV STDDDTDHPD LGSEGALVNT AASDSSDRSK GKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISGTG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNKQMN ELRSALNAHA GDSELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQLMGINNL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT
301: RQSARALLAI HDYFSRLRAL SSLWLARPRE

Arabidopsis Description

TGA2BZIP transcription factor TGA2 [Source:UniProtKB/TrEMBL;Acc:B2BDR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.