Factsheet for Solyc10g078670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029743	Potato	nucleus, plastid	75.36	96.58
Solyc10g080410.1.1	Tomato	nucleus	63.86	67.76
KRH67029	Soybean	nucleus	67.35	66.8
KRG95350	Soybean	nucleus	66.74	66.19
VIT_08s0007g06160.t01	Wine grape	nucleus	66.53	65.99
KRH71904	Soybean	nucleus	63.45	63.84
CDY71150	Canola	nucleus, plastid	25.87	63.64
Bra009233.1-P	Field mustard	cytosol	36.55	63.57
GSMUA_Achr9P27700_001	Banana	nucleus	48.87	63.47
GSMUA_Achr3P11150_001	Banana	nucleus	53.39	62.8
CDX70061	Canola	nucleus	56.26	60.75
CDX98963	Canola	nucleus	56.26	60.75
AT5G06839.3	Thale cress	nucleus	56.88	60.22
KRH32997	Soybean	nucleus	63.24	59.57
Bra005914.1-P	Field mustard	nucleus	52.98	59.45
CDY70235	Canola	nucleus	43.74	58.52
CDY70714	Canola	nucleus	41.27	57.1
CDY70396	Canola	mitochondrion	24.44	56.94
Solyc11g064950.1.1	Tomato	nucleus	37.37	56.17
Solyc01g008730.2.1	Tomato	nucleus	36.34	54.13
Zm00001d020938_P002	Maize	nucleus	53.8	53.91
KXG35912	Sorghum	nucleus	54.83	53.4
Zm00001d006027_P002	Maize	nucleus	51.54	49.9
GSMUA_Achr9P20200_001	Banana	plastid	55.65	49.54
TraesCS5B01G265300.1	Wheat	nucleus	52.77	48.86
TraesCS5D01G273500.1	Wheat	nucleus	51.95	48.84
TraesCS5A01G265600.1	Wheat	nucleus	51.95	48.84
Os09t0489500-02	Rice	nucleus	52.36	48.76
Solyc11g068370.1.1	Tomato	nucleus	36.34	47.58
Solyc10g080780.1.1	Tomato	cytosol	25.05	45.35
HORVU5Hr1G073410.1	Barley	nucleus	52.57	45.15
Solyc12g056860.1.1	Tomato	nucleus	31.01	43.39
Solyc10g080770.1.1	Tomato	nucleus	39.22	42.44
Solyc06g074320.2.1	Tomato	nucleus	43.12	41.92
Solyc04g072460.2.1	Tomato	nucleus	30.39	41.0
Solyc04g011670.2.1	Tomato	nucleus	31.21	40.64
Solyc04g054320.2.1	Tomato	nucleus	30.39	40.0
Solyc05g009660.2.1	Tomato	nucleus	39.22	39.46

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	UniProt:K4D2A9	PFAM:PF07716	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF241	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc10g078670.1
EnsemblPlants:Solyc10g078670.1.1	InterPro:TGA_domain	UniParc:UPI000276A3DB	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:60402068..60408465

Molecular Weight (calculated)

55518.3 Da

IEP (calculated)

6.742

GRAVY (calculated)

-0.690

Length

487 amino acids

Sequence
(BLAST)

001: MGLQSHENQI TFGNHDHQFH QQQQQTQHQH QHQQLLFQNN SDQRSNADQI SFGMLHQSSS VIPENFINKE SSSTGGYDLG ELDDQALFLY LDAQDPSSNH
101: DQIQNNSEMM RPPTLNIFPS QPMHVEPSST KGNTGFVSSG SEKSSEPSIM ELSKSKNNVL STSSGPEPKI PKREWNRKGQ NSGSEQNAPK TTDHKTLRRL
201: AQNREAARKS RIRKKAYIQQ LESSRIRLAQ LEQELQRARS QGFHFAGTLL GGDQGLPNNI ANMTSEAAAF DMEYSRWLEE HHRLMCELRN AVTEHFPEND
301: LRIYVENCVT HYDEMMNLKS ILLKTDVFHL ISGMWRTPAE RCFIWMGDFR PSELIKIILS QIEPLTEQQF VGICGLQQST QEAEEALSQG LENLNQSVSD
401: TIVSDALLAN CPQNMANYMG QMAIAINKLS TIEGFVRQAD NLRHQTIHRL HQILTSRQAA RCFLAIAEYF HRLRALSSLW VARPRHE

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.