Factsheet for VIT_08s0007g06160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029743	Potato	nucleus, plastid	58.86	76.05
KRH67029	Soybean	nucleus	75.97	75.97
KRG95350	Soybean	nucleus	75.36	75.36
KRH71904	Soybean	nucleus	70.06	71.07
Bra009233.1-P	Field mustard	cytosol	39.71	69.64
KRH32997	Soybean	nucleus	72.51	68.86
GSMUA_Achr9P27700_001	Banana	nucleus	52.55	68.8
CDY71150	Canola	nucleus, plastid	27.7	68.69
GSMUA_Achr3P11150_001	Banana	nucleus	57.23	67.87
Solyc10g078670.1.1	Tomato	nucleus	65.99	66.53
CDX70061	Canola	nucleus	60.29	65.63
CDX98963	Canola	nucleus	60.29	65.63
PGSC0003DMT400060865	Potato	nucleus	61.51	65.51
AT5G06839.3	Thale cress	nucleus	60.9	65.0
Solyc10g080410.1.1	Tomato	nucleus	60.49	64.71
CDY70235	Canola	nucleus	47.86	64.56
Bra005914.1-P	Field mustard	nucleus	57.03	64.52
CDY70714	Canola	nucleus	45.42	63.35
CDY70396	Canola	mitochondrion	26.48	62.2
Zm00001d020938_P002	Maize	nucleus	56.42	57.0
KXG35912	Sorghum	nucleus	56.82	55.8
GSMUA_Achr9P20200_001	Banana	plastid	58.86	52.83
Zm00001d006027_P002	Maize	nucleus	53.77	52.49
Os09t0489500-02	Rice	nucleus	55.4	52.01
VIT_18s0001g04470.t01	Wine grape	nucleus	37.68	50.96
TraesCS5D01G273500.1	Wheat	nucleus	52.95	50.19
TraesCS5A01G265600.1	Wheat	nucleus	52.75	50.0
TraesCS5B01G265300.1	Wheat	nucleus	53.36	49.81
VIT_07s0031g01320.t01	Wine grape	nucleus	34.62	48.71
VIT_08s0007g05170.t01	Wine grape	nucleus	43.38	47.23
HORVU5Hr1G073410.1	Barley	nucleus	53.56	46.38
VIT_01s0011g03230.t01	Wine grape	nucleus	42.77	46.36
VIT_13s0084g00660.t01	Wine grape	nucleus	43.58	45.63
VIT_06s0080g00360.t01	Wine grape	nucleus	44.6	43.8

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100262335	wikigene:100262335	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ProteinID:CCB55268
ProteinID:CCB55268.1	ncoils:Coil	UniProt:F6HLL2	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	EntrezGene:LOC100262335	wikigene:LOC100262335	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF241	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI0001983DFC	ArrayExpress:VIT_08s0007g06160	EnsemblPlantsGene:VIT_08s0007g06160	EnsemblPlants:VIT_08s0007g06160.t01	unigene:Vvi.23639
RefSeq:XP_002275147	RefSeq:XP_002275147.1	InterPro:bZIP	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:19963578..19968190

Molecular Weight (calculated)

54647.2 Da

IEP (calculated)

7.133

GRAVY (calculated)

-0.549

Length

491 amino acids

Sequence
(BLAST)

001: MRFSRAAAEE EIEAKLLVSP FMATASKPTN HTSHLELQHQ QQQQQQHQQV LDHHQMSYGM MQSSSSSAMP GNFLSKDPGA YDLGELDQAL FLYLDGHDPS
101: AIQEQRHNSD IRPPTLNIFP SQPMHVEPPI KASLGLVSPS TSGSKRPSEP SMELANPKND ANVSGPDQPA KAVKREGNRK GPTSSSEQEG PKTPDPKTLR
201: RLAQNREAAR KSRLRKKAYV QQLESSRIKL TQLEQELQRA RAQGLIFTGG GLLGGGGGDQ NAPVAVTNLS SDAAVFDMEY GRWLEEHHRL MCELRAAVQE
301: HLPENDLRLF VDNCIAHFDG MMNLKSMVAK SDVFHLVSGM WKTPAERCFM WMGGFRPSEV IKIILNQIEP LTEQQILGIC GLQQSTQEAE EALSQGLEAL
401: NQSLSDTIAS DSLSAPPNMA NYMGQMAIAM NKLSTLEGFV RQADNLRHQT IHRLQQVLTT RQAARCLLAM AEYFHRLRAL SSLWMARPRQ E

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.