Factsheet for VIT_18s0001g04470.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0146g00220.t01
VIT_11s0016g01990.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	VIT_11s0016g01990.t01	AT1G64280.1	10659709
AT1G22070.1	VIT_11s0016g01990.t01	AT1G64280.1	10662863
AT1G22070.1	VIT_11s0016g01990.t01	AT1G64280.1	15634206
AT1G22070.1	VIT_11s0016g01990.t01	AT1G64280.1	21798944
AT1G22070.1	VIT_01s0146g00220.t01	AT3G02000.1	19218396
AT1G77920.1	VIT_11s0016g01990.t01	AT1G64280.1	10662863
AT1G77920.1	VIT_11s0016g01990.t01	AT1G64280.1	15634206
AT1G77920.1	VIT_01s0146g00220.t01	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g01320.t01	Wine grape	nucleus	68.32	71.06
Bra015646.1-P	Field mustard	nucleus	63.36	67.85
GSMUA_Achr5P16630_001	Banana	nucleus	68.04	67.67
Solyc12g056860.1.1	Tomato	nucleus	64.74	67.53
Solyc04g072460.2.1	Tomato	nucleus	66.39	66.76
PGSC0003DMT400043651	Potato	nucleus	66.12	66.48
PGSC0003DMT400070884	Potato	nucleus	66.12	66.48
CDX68037	Canola	nucleus	67.49	66.04
AT1G77920.1	Thale cress	nucleus	66.67	65.76
AT1G22070.1	Thale cress	nucleus	68.04	64.32
GSMUA_AchrUn_...	Banana	nucleus	62.26	63.84
Bra031364.1-P	Field mustard	nucleus	66.39	63.76
CDY41495	Canola	nucleus	64.19	63.14
Bra016389.1-P	Field mustard	nucleus	63.91	63.04
CDY38843	Canola	nucleus	63.91	62.7
CDY38253	Canola	nucleus	66.12	62.34
GSMUA_Achr10P...	Banana	nucleus	59.23	61.25
KRH63045	Soybean	cytosol	15.7	60.64
KRH18838	Soybean	nucleus	59.78	58.65
KRH16629	Soybean	nucleus	59.23	58.11
KRH53141	Soybean	nucleus	56.47	57.75
CDY21336	Canola	nucleus	66.12	57.42
KRH64780	Soybean	nucleus	55.92	56.08
Zm00001d016312_P001	Maize	cytosol	14.33	55.91
CDX88399	Canola	nucleus	66.12	55.81
CDX87494	Canola	nucleus	66.39	54.28
Os04t0637000-01	Rice	nucleus	57.3	52.39
KXG27222	Sorghum	nucleus	55.1	49.02
Zm00001d026398_P006	Maize	nucleus	53.99	47.57
TraesCS2D01G529000.1	Wheat	nucleus	53.72	45.88
TraesCS2A01G526300.1	Wheat	nucleus	52.89	45.82
TraesCS2B01G556600.1	Wheat	nucleus	54.55	45.52
Zm00001d024160_P003	Maize	nucleus	51.79	44.34
KXG38496	Sorghum	nucleus	37.74	44.05
Zm00001d002143_P002	Maize	cytosol	52.89	43.74
VIT_08s0007g05170.t01	Wine grape	nucleus	53.17	42.79
VIT_13s0084g00660.t01	Wine grape	nucleus	54.55	42.22
VIT_01s0011g03230.t01	Wine grape	nucleus	52.62	42.16
Os08t0176900-01	Rice	nucleus	43.53	40.62
Zm00001d041428_P001	Maize	cytosol	16.8	39.1
CDX79240	Canola	nucleus	60.61	38.6
VIT_08s0007g06160.t01	Wine grape	nucleus	50.96	37.68
OQU79985	Sorghum	golgi, vacuole	52.62	37.02
VIT_06s0080g00360.t01	Wine grape	nucleus	49.04	35.6
HORVU2Hr1G116090.2	Barley	cytosol	35.54	30.5

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100255706	wikigene:100255706	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ProteinID:CCB45537
ProteinID:CCB45537.1	ncoils:Coil	UniProt:F6H0P0	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	EntrezGene:LOC100255706	wikigene:LOC100255706	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI000210A934	ArrayExpress:VIT_18s0001g04470	EnsemblPlantsGene:VIT_18s0001g04470	EnsemblPlants:VIT_18s0001g04470.t01	RefSeq:XP_002285820
RefSeq:XP_002285820.1	InterPro:bZIP	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:3861987..3867762

Molecular Weight (calculated)

41268.9 Da

IEP (calculated)

7.130

GRAVY (calculated)

-0.593

Length

363 amino acids

Sequence
(BLAST)

001: MNMSSSSTQF ATSRRIGMHE PLHQISMWRD TFKGDSNPIT GASTIMQVDT MLDNKSESTS HDSLGPSGNS QPEDRTTDKT QRRLAQNREA ARKSRLRKKA
101: YVQQLETSRL KLTELEQELE RARQQGLYIG GSLDTTRVGF SGTINSGIAT FEMEYGHWVE EQHRQNCELR NALQAHVTDI ELRILVESAL NHYYELFRMK
201: ADAAKADVFY LMSGMWRTSA ERFFLWIGGF RPSELLNVLM PHFEPLTDQQ LLDVCNLRQS SQQAEDALSQ GMDKLQQTLA QSIVTDPVGA GNYRSQMAEA
301: VEKLDALESF VNQADHLRQQ TLRQMSHLLT TRQAARGLLA LGEYFHRLRA LSSLWAARPR EPA

Best Arabidopsis Sequence Match ( AT5G10030.2 )
(BLAST)

001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT

Arabidopsis Description

TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.