Factsheet for VIT_01s0146g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g03230.t01
VIT_04s0008g04950.t01
VIT_12s0057g00710.t01
VIT_13s0084g00660.t01
VIT_17s0000g02230.t01
VIT_18s0001g04470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02000.1	VIT_18s0001g04470.t01	AT1G22070.1	19218396
AT3G02000.1	VIT_01s0011g03230.t01	AT1G68640.1	19218396
AT3G02000.1	VIT_18s0001g04470.t01	AT1G77920.1	19218396
AT3G02000.1	VIT_13s0084g00660.t01	AT5G06960.1	19218396
AT5G14070.1	VIT_12s0057g00710.t01	AT2G05230.1	21798944
AT5G14070.1	VIT_12s0057g00710.t01	AT2G05250.1	21798944
AT5G14070.1	VIT_17s0000g02230.t01	AT3G17860.1	21798944
AT5G14070.1	VIT_04s0008g04950.t01	AT4G32570.1	21798944
AT5G14070.1	VIT_13s0084g00660.t01	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g01570.t01	Wine grape	cytosol	64.1	81.3
Solyc05g015910.1.1	Tomato	cytosol	62.82	74.81
Solyc01g009910.1.1	Tomato	mitochondrion, plastid	57.05	74.17
PGSC0003DMT400006076	Potato	plastid	63.46	73.88
PGSC0003DMT400013435	Potato	cytosol, plastid	56.41	73.33
KRG94592	Soybean	plastid	61.54	72.73
GSMUA_Achr10P...	Banana	cytosol	62.18	71.85
Solyc01g009900.2.1	Tomato	cytosol, plastid	55.13	71.67
KRH06898	Soybean	plastid	61.54	71.64
PGSC0003DMT400013427	Potato	mitochondrion, plastid	53.85	70.0
EES05136	Sorghum	cytosol	57.69	69.77
KRH70543	Soybean	cytosol	58.33	68.42
GSMUA_Achr6P23860_001	Banana	plastid	59.62	68.38
Solyc01g009890.1.1	Tomato	cytosol, plastid	56.41	67.69
HORVU0Hr1G003840.1	Barley	extracellular	57.69	67.16
PGSC0003DMT400013430	Potato	cytosol	55.77	66.92
Zm00001d016593_P001	Maize	cytosol	55.77	66.92
GSMUA_AchrUn_...	Banana	cytosol	55.77	66.92
Os02t0512400-01	Rice	cytosol	57.69	66.67
GSMUA_Achr3P18710_001	Banana	cytosol	56.41	66.17
Os04t0393500-01	Rice	cytosol	57.05	65.93
TraesCS2D01G284300.1	Wheat	cytosol, extracellular	56.41	65.67
TraesCS2B01G302700.1	Wheat	cytosol, extracellular	55.77	64.93
TraesCS2A01G285600.1	Wheat	cytosol, extracellular	55.77	64.93
VIT_05s0020g01760.t01	Wine grape	cytosol	42.31	64.71
Zm00001d003927_P001	Maize	cytosol	56.41	64.23
KRH01571	Soybean	cytosol	58.33	64.08
EES10652	Sorghum	cytosol	55.77	63.5
VIT_05s0020g01750.t01	Wine grape	cytosol	41.03	62.14
VIT_07s0104g01390.t01	Wine grape	plasma membrane	39.1	59.8
AT3G02000.1	Thale cress	cytosol	51.92	59.56
CDX70540	Canola	cytosol	50.64	57.66
CDX91918	Canola	cytosol	49.36	57.46
Bra023448.1-P	Field mustard	cytosol	50.0	56.93
Bra000980.1-P	Field mustard	cytosol	50.0	56.93
CDX74327	Canola	cytosol	50.0	56.93
CDX85614	Canola	cytosol	50.0	56.93
Bra006236.1-P	Field mustard	cytosol	49.36	56.62
CDX78558	Canola	cytosol	49.36	56.2
Bra008782.1-P	Field mustard	cytosol	48.08	55.97
CDX91084	Canola	cytosol	48.72	55.47
AT5G14070.1	Thale cress	cytosol	49.36	55.0
VIT_07s0104g01400.t01	Wine grape	cytosol	33.97	51.96
CDX69609	Canola	cytosol	32.69	50.49
VIT_07s0104g01420.t01	Wine grape	cytosol	30.13	44.34
CDY58422	Canola	cytosol	41.67	38.69
VIT_10s0003g03940.t01	Wine grape	mitochondrion	37.82	32.96

Protein Annotations

EntrezGene:100255784	wikigene:100255784	MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:AM437936	ProteinID:CAN67225
ProteinID:CAN67225.1	ProteinID:CCB60852	ProteinID:CCB60852.1	UniProt:F6I1N5	EMBL:FN596513	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	InterPro:IPR002109	EntrezGene:LOC100255784	wikigene:LOC100255784
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF62	SUPFAM:SSF52833	TIGRFAMs:TIGR02189
InterPro:Thioredoxin-like_sf	UniParc:UPI0001982A53	ArrayExpress:VIT_01s0146g00220	EnsemblPlantsGene:VIT_01s0146g00220	EnsemblPlants:VIT_01s0146g00220.t01	RefSeq:XP_002264542
RefSeq:XP_002264542.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:22035757..22036232

Molecular Weight (calculated)

16969.7 Da

IEP (calculated)

8.350

GRAVY (calculated)

0.112

Length

156 amino acids

Sequence
(BLAST)

001: MPPTHPHYKP TFSHHHSLHA SRAVQMYYHH SESWGYYTAA AAAAAAARVM ADPLERVARL ASENAVVIFS LSSCCMCHAV KRLFCGMGVN PTVYELDQDP
101: RGKEIERALM RLLGNSPAVP VVFIGGKLVG SMDSVMASHI NGTLVPLLKE AGALWL

Best Arabidopsis Sequence Match ( AT3G02000.1 )
(BLAST)

001: MQYQTESWGS YKMSSLGFGG LGMVADTGLL RIESLASESA VVIFSVSTCC MCHAVKGLFR GMGVSPAVHE LDLHPYGGDI QRALIRLLGC SGSSSPGSLP
101: VVFIGGKLVG AMDRVMASHI NGSLVPLLKD AGALWL

Arabidopsis Description

GRXC7ROXY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBU2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.