Factsheet for PGSC0003DMT400013427

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400024428
PGSC0003DMT400026710
PGSC0003DMT400033741
PGSC0003DMT400036790
PGSC0003DMT400043651
PGSC0003DMT400067114
PGSC0003DMT400070884
PGSC0003DMT400074101
PGSC0003DMT400092645

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02000.1	PGSC0003DMT400043651	AT1G22070.1	19218396
AT3G02000.1	PGSC0003DMT400070884	AT1G22070.1	19218396
AT3G02000.1	PGSC0003DMT400033741	AT1G68640.1	19218396
AT3G02000.1	PGSC0003DMT400043651	AT1G77920.1	19218396
AT3G02000.1	PGSC0003DMT400070884	AT1G77920.1	19218396
AT3G02000.1	PGSC0003DMT400024428	AT5G06960.1	19218396
AT3G02000.1	PGSC0003DMT400026710	AT5G06960.1	19218396
AT5G14070.1	PGSC0003DMT400092645	AT2G05230.1	21798944
AT5G14070.1	PGSC0003DMT400092645	AT2G05250.1	21798944
AT5G14070.1	PGSC0003DMT400036790	AT3G17860.1	21798944
AT5G14070.1	PGSC0003DMT400074101	AT3G17860.1	21798944
AT5G14070.1	PGSC0003DMT400067114	AT4G32570.1	21798944
AT5G14070.1	PGSC0003DMT400024428	AT5G06960.1	21798944
AT5G14070.1	PGSC0003DMT400026710	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009910.1.1	Tomato	mitochondrion, plastid	91.67	91.67
PGSC0003DMT400013435	Potato	cytosol, plastid	90.0	90.0
PGSC0003DMT400013430	Potato	cytosol	80.0	73.85
PGSC0003DMT400058325	Potato	cytosol	56.67	66.67
PGSC0003DMT400006076	Potato	plastid	72.5	64.93
KRH70543	Soybean	cytosol	68.33	61.65
GSMUA_Achr6P23860_001	Banana	plastid	68.33	60.29
GSMUA_Achr10P...	Banana	cytosol	66.67	59.26
KRG94592	Soybean	plastid	65.0	59.09
KRH06898	Soybean	plastid	65.83	58.96
EES05136	Sorghum	cytosol	63.33	58.91
GSMUA_Achr3P18710_001	Banana	cytosol	65.0	58.65
Zm00001d016593_P001	Maize	cytosol	61.67	56.92
KRH01571	Soybean	cytosol	66.67	56.34
Zm00001d003927_P001	Maize	cytosol	64.17	56.2
HORVU0Hr1G003840.1	Barley	extracellular	62.5	55.97
TraesCS2A01G285600.1	Wheat	cytosol, extracellular	62.5	55.97
Os02t0512400-01	Rice	cytosol	62.5	55.56
Os04t0393500-01	Rice	cytosol	62.5	55.56
TraesCS2D01G284300.1	Wheat	cytosol, extracellular	61.67	55.22
TraesCS2B01G302700.1	Wheat	cytosol, extracellular	61.67	55.22
PGSC0003DMT400058374	Potato	cytosol	46.67	54.9
EES10652	Sorghum	cytosol	62.5	54.74
GSMUA_AchrUn_...	Banana	cytosol	59.17	54.62
VIT_01s0146g00220.t01	Wine grape	cytosol	70.0	53.85
CDX91918	Canola	cytosol	60.0	53.73
AT3G02000.1	Thale cress	cytosol	60.83	53.68
CDX74327	Canola	cytosol	60.0	52.55
Bra000980.1-P	Field mustard	cytosol	60.0	52.55
Bra006236.1-P	Field mustard	cytosol	59.17	52.21
CDX78558	Canola	cytosol	59.17	51.82
CDX85614	Canola	cytosol	58.33	51.09
CDX70540	Canola	cytosol	58.33	51.09
Bra023448.1-P	Field mustard	cytosol	58.33	51.09
PGSC0003DMT400029525	Potato	cytosol	43.33	50.98
Bra008782.1-P	Field mustard	cytosol	55.83	50.0
PGSC0003DMT400029597	Potato	cytosol	42.5	50.0
CDX91084	Canola	cytosol	56.67	49.63
AT5G14070.1	Thale cress	cytosol	57.5	49.29
PGSC0003DMT400029596	Potato	cytosol	41.67	49.02
PGSC0003DMT400013649	Potato	cytosol	40.83	48.04
PGSC0003DMT400079099	Potato	cytosol	38.33	47.42
PGSC0003DMT400041381	Potato	cytosol, plastid	40.0	47.06
PGSC0003DMT400042706	Potato	cytosol	39.17	45.63
CDX69609	Canola	cytosol	38.33	45.54
PGSC0003DMT400027953	Potato	cytosol, plastid	38.33	45.54
PGSC0003DMT400041378	Potato	cytosol, plastid	38.33	45.1
PGSC0003DMT400041380	Potato	cytosol, plastid	38.33	45.1
PGSC0003DMT400046079	Potato	cytosol	48.33	44.96
PGSC0003DMT400041379	Potato	cytosol, plastid	35.0	44.21
PGSC0003DMT400027946	Potato	cytosol, plastid	37.5	44.12
PGSC0003DMT400041382	Potato	cytosol	36.67	43.14
PGSC0003DMT400042707	Potato	cytosol	36.67	43.14
PGSC0003DMT400027950	Potato	cytosol, plastid	36.67	43.14
PGSC0003DMT400027949	Potato	cytosol, plastid	36.67	43.14
PGSC0003DMT400027948	Potato	cytosol, plastid	36.67	43.14
PGSC0003DMT400027951	Potato	cytosol, plastid	35.83	42.16
PGSC0003DMT400027947	Potato	cytosol, plastid	35.83	42.16
PGSC0003DMT400027954	Potato	cytosol, plastid	35.83	42.16
PGSC0003DMT400027952	Potato	cytosol	33.33	42.11
PGSC0003DMT400077393	Potato	cytosol	34.17	39.81
PGSC0003DMT400077394	Potato	cytosol	34.17	39.42
PGSC0003DMT400029673	Potato	cytosol	34.17	38.68
CDY58422	Canola	cytosol	48.33	34.52
PGSC0003DMT400013650	Potato	cytosol	30.0	12.2

Protein Annotations

EntrezGene:102578615	MapMan:18.8.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2
InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:M1A2T9	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400005237	PGSC:PGSC0003DMG400005237
EnsemblPlants:PGSC0003DMT400013427	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF62	SUPFAM:SSF52833	TIGRFAMs:TIGR02189
InterPro:Thioredoxin-like_sf	UniParc:UPI00029624F8	RefSeq:XP_006363784.1	SEG:seg	:	:

Description

Glutaredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400005237]

Coordinates

chr1:+:8832052..8832582

Molecular Weight (calculated)

13238.2 Da

IEP (calculated)

8.656

GRAVY (calculated)

0.069

Length

120 amino acids

Sequence
(BLAST)

001: MQYQNTRARQ RSSFSDSLER VARLASRSAV VIFSSSSCCM CHAIKMLFCE LGVSPMVYEL DQDPNGRGME RALYKLLGNS PAIPVVFIGG ELIGPMDRVM
101: TSHINGTLVP RLKDAGALWL

Best Arabidopsis Sequence Match ( AT5G14070.1 )
(BLAST)

001: MQYKTETRGS LSYNNNSKVM NNMNVFPSET LAKIESMAAE NAVVIFSVST CCMCHAIKRL FRGMGVSPAV HELDLLPYGV EIHRALLRLL GCSSGGATSP
101: GALPVVFIGG KMVGAMERVM ASHINGSLVP LLKDAGALWL

Arabidopsis Description

GRXC8Glutaredoxin-C8 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF89]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.