Factsheet for PGSC0003DMT400013435

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400024428
PGSC0003DMT400026710
PGSC0003DMT400033741
PGSC0003DMT400036790
PGSC0003DMT400043651
PGSC0003DMT400067114
PGSC0003DMT400070884
PGSC0003DMT400074101
PGSC0003DMT400092645

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02000.1	PGSC0003DMT400043651	AT1G22070.1	19218396
AT3G02000.1	PGSC0003DMT400070884	AT1G22070.1	19218396
AT3G02000.1	PGSC0003DMT400033741	AT1G68640.1	19218396
AT3G02000.1	PGSC0003DMT400043651	AT1G77920.1	19218396
AT3G02000.1	PGSC0003DMT400070884	AT1G77920.1	19218396
AT3G02000.1	PGSC0003DMT400024428	AT5G06960.1	19218396
AT3G02000.1	PGSC0003DMT400026710	AT5G06960.1	19218396
AT5G14070.1	PGSC0003DMT400092645	AT2G05230.1	21798944
AT5G14070.1	PGSC0003DMT400092645	AT2G05250.1	21798944
AT5G14070.1	PGSC0003DMT400036790	AT3G17860.1	21798944
AT5G14070.1	PGSC0003DMT400074101	AT3G17860.1	21798944
AT5G14070.1	PGSC0003DMT400067114	AT4G32570.1	21798944
AT5G14070.1	PGSC0003DMT400024428	AT5G06960.1	21798944
AT5G14070.1	PGSC0003DMT400026710	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009900.2.1	Tomato	cytosol, plastid	95.0	95.0
PGSC0003DMT400013427	Potato	mitochondrion, plastid	90.0	90.0
PGSC0003DMT400013430	Potato	cytosol	85.0	78.46
PGSC0003DMT400006076	Potato	plastid	77.5	69.4
KRH70543	Soybean	cytosol	70.0	63.16
PGSC0003DMT400058325	Potato	cytosol	53.33	62.75
GSMUA_Achr10P...	Banana	cytosol	70.0	62.22
KRG94592	Soybean	plastid	66.67	60.61
EES05136	Sorghum	cytosol	65.0	60.47
KRH06898	Soybean	plastid	67.5	60.45
GSMUA_Achr6P23860_001	Banana	plastid	68.33	60.29
Zm00001d016593_P001	Maize	cytosol	65.0	60.0
KRH01571	Soybean	cytosol	70.0	59.15
HORVU0Hr1G003840.1	Barley	extracellular	65.83	58.96
GSMUA_Achr3P18710_001	Banana	cytosol	65.0	58.65
Os02t0512400-01	Rice	cytosol	65.0	57.78
Os04t0393500-01	Rice	cytosol	65.0	57.78
TraesCS2D01G284300.1	Wheat	cytosol, extracellular	64.17	57.46
TraesCS2B01G302700.1	Wheat	cytosol, extracellular	64.17	57.46
TraesCS2A01G285600.1	Wheat	cytosol, extracellular	64.17	57.46
VIT_01s0146g00220.t01	Wine grape	cytosol	73.33	56.41
EES10652	Sorghum	cytosol	64.17	56.2
Zm00001d003927_P001	Maize	cytosol	64.17	56.2
GSMUA_AchrUn_...	Banana	cytosol	60.83	56.15
CDX91918	Canola	cytosol	59.17	52.99
AT3G02000.1	Thale cress	cytosol	60.0	52.94
Bra006236.1-P	Field mustard	cytosol	59.17	52.21
PGSC0003DMT400058374	Potato	cytosol	44.17	51.96
CDX78558	Canola	cytosol	59.17	51.82
CDX74327	Canola	cytosol	59.17	51.82
Bra000980.1-P	Field mustard	cytosol	59.17	51.82
Bra008782.1-P	Field mustard	cytosol	57.5	51.49
CDX85614	Canola	cytosol	58.33	51.09
CDX70540	Canola	cytosol	58.33	51.09
Bra023448.1-P	Field mustard	cytosol	58.33	51.09
CDX91084	Canola	cytosol	57.5	50.37
PGSC0003DMT400029525	Potato	cytosol	42.5	50.0
PGSC0003DMT400029597	Potato	cytosol	41.67	49.02
AT5G14070.1	Thale cress	cytosol	56.67	48.57
PGSC0003DMT400046079	Potato	cytosol	51.67	48.06
PGSC0003DMT400029596	Potato	cytosol	40.0	47.06
CDX69609	Canola	cytosol	39.17	46.53
PGSC0003DMT400013649	Potato	cytosol	39.17	46.08
PGSC0003DMT400041381	Potato	cytosol, plastid	39.17	46.08
PGSC0003DMT400027953	Potato	cytosol, plastid	37.5	44.55
PGSC0003DMT400079099	Potato	cytosol	35.83	44.33
PGSC0003DMT400041378	Potato	cytosol, plastid	37.5	44.12
PGSC0003DMT400041380	Potato	cytosol, plastid	37.5	44.12
PGSC0003DMT400042706	Potato	cytosol	37.5	43.69
PGSC0003DMT400041379	Potato	cytosol, plastid	34.17	43.16
PGSC0003DMT400027946	Potato	cytosol, plastid	36.67	43.14
PGSC0003DMT400042707	Potato	cytosol	36.67	43.14
PGSC0003DMT400027950	Potato	cytosol, plastid	35.83	42.16
PGSC0003DMT400027948	Potato	cytosol, plastid	35.83	42.16
PGSC0003DMT400027949	Potato	cytosol, plastid	35.83	42.16
PGSC0003DMT400041382	Potato	cytosol	35.83	42.16
PGSC0003DMT400027954	Potato	cytosol, plastid	35.0	41.18
PGSC0003DMT400027947	Potato	cytosol, plastid	35.0	41.18
PGSC0003DMT400027951	Potato	cytosol, plastid	35.0	41.18
PGSC0003DMT400027952	Potato	cytosol	32.5	41.05
PGSC0003DMT400029673	Potato	cytosol	35.83	40.57
PGSC0003DMT400077393	Potato	cytosol	33.33	38.84
PGSC0003DMT400077394	Potato	cytosol	32.5	37.5
CDY58422	Canola	cytosol	49.17	35.12
PGSC0003DMT400013650	Potato	cytosol	30.83	12.54

Protein Annotations

EntrezGene:102604935	MapMan:18.8.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2
InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:M1A2U5	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400005244	PGSC:PGSC0003DMG400005244
EnsemblPlants:PGSC0003DMT400013435	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF62	SUPFAM:SSF52833	TIGRFAMs:TIGR02189
InterPro:Thioredoxin-like_sf	UniParc:UPI000295496C	RefSeq:XP_006363780.1	SEG:seg	:	:

Description

Glutaredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400005244]

Coordinates

chr1:+:8820928..8821534

Molecular Weight (calculated)

12948.8 Da

IEP (calculated)

8.337

GRAVY (calculated)

0.104

Length

120 amino acids

Sequence
(BLAST)

001: MQYQNTRARQ RSSSSDSLER VARLASGSAV VLFSSSSCCM CHAMKRLFCE LGVSPMVYEL DQDPNGKGME RALSKLIGNS PAIPVVFIGG ELIGSMDRVM
101: ASHINGTLVP LLKEAGALWL

Best Arabidopsis Sequence Match ( AT5G14070.1 )
(BLAST)

001: MQYKTETRGS LSYNNNSKVM NNMNVFPSET LAKIESMAAE NAVVIFSVST CCMCHAIKRL FRGMGVSPAV HELDLLPYGV EIHRALLRLL GCSSGGATSP
101: GALPVVFIGG KMVGAMERVM ASHINGSLVP LLKDAGALWL

Arabidopsis Description

GRXC8Glutaredoxin-C8 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF89]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.