Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g118540.2.1 | Tomato | cytosol | 71.28 | 85.28 |
| PGSC0003DMT400074101 | Potato | nucleus | 28.72 | 44.27 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 36.67 | 36.11 |
| PGSC0003DMT400081778 | Potato | cytosol | 29.49 | 34.02 |
| AT3G17860.1 | Thale cress | nucleus | 29.74 | 32.95 |
| CDY18478 | Canola | nucleus | 29.23 | 32.29 |
| Bra021281.1-P | Field mustard | nucleus | 29.23 | 32.29 |
| AT1G48500.1 | Thale cress | nucleus | 25.38 | 31.94 |
| CDX95810 | Canola | nucleus | 27.18 | 31.64 |
| KRH39044 | Soybean | nucleus | 31.28 | 31.61 |
| Bra022254.1-P | Field mustard | nucleus | 26.92 | 31.34 |
| CDY72405 | Canola | plastid | 12.31 | 30.97 |
| CDX92171 | Canola | nucleus | 26.15 | 30.36 |
| Zm00001d032009_P001 | Maize | plastid | 10.26 | 29.85 |
| EER98873 | Sorghum | nucleus | 28.21 | 26.96 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 28.21 | 26.83 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 27.95 | 26.65 |
| Zm00001d020409_P002 | Maize | nucleus | 27.95 | 26.39 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 27.69 | 26.34 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 27.44 | 25.78 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 27.44 | 25.72 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 27.18 | 25.36 |
| Os08t0428400-01 | Rice | nucleus | 25.9 | 23.65 |
| HORVU5Hr1G060730.3 | Barley | plastid | 25.38 | 23.08 |
| TraesCSU01G139100.1 | Wheat | nucleus | 19.74 | 21.81 |
| EES15016 | Sorghum | cytosol | 23.85 | 21.73 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 16.67 | 21.52 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 19.23 | 21.19 |
| Zm00001d050365_P006 | Maize | nucleus | 22.82 | 20.32 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 18.21 | 20.0 |
| TraesCSU01G139000.1 | Wheat | nucleus | 18.46 | 20.0 |
| HORVU4Hr1G087520.3 | Barley | plastid | 16.67 | 18.79 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 23.59 | 17.07 |
Protein Annotations
| EMBL:AB111942 | EnsemblPlants:PGSC0003DMT400036790 | EnsemblPlantsGene:PGSC0003DMG400014187 | EntrezGene:102589610 | InterPro:CCT_CS | InterPro:IPR010399 |
| InterPro:Tify_dom | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 |
| PGSC:PGSC0003DMG400014187 | ProteinID:BAD04851 | ProteinID:BAD04851.1 | RefSeq:NP_001275246.1 | SEG:seg | SMART:SM00979 |
| UniParc:UPI0000227A3A | UniProt:Q76B43 | MapMan:15.5.45 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014187]
Coordinates
chr3:+:58053239..58056352
Molecular Weight (calculated)
41121.0 Da
IEP (calculated)
9.845
GRAVY (calculated)
-0.190
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFMGLTV KQEVLEEPID PAPLRSSAMQ WSFSNNVTAH PQYLSFKSAP EDKPKIGFDS LASTGLVTIT TTEAVDSSHR TYSDVTQKNM MLERQGGTHY
101: TTTTFSPHHY DAHSVHRSHG VRVLPLASPT NQISVSMTMP GHKSFISPVG QNLITTVNQL PGAGALVASP ISAIPSSSTV VGTTDLRGAP KTPPGPAQLT
201: IFYGGSVCVY DNVSPEKAQA IMLLAGNAPP VAPNATSTLS PVQAPIPKSL AIDPFVVNQC RNTTPTLASP ISITSHGGTQ SARVSRNTNG VTIIKSIGVL
301: PSPSLKAEPS KVASSIGSFP ASLVPSAVPQ ARKASLARFL EKRKERVISA SPYPPNSKQS PECSTPELGS RSLSMNSSGS CPPHIINLVK
101: TTTTFSPHHY DAHSVHRSHG VRVLPLASPT NQISVSMTMP GHKSFISPVG QNLITTVNQL PGAGALVASP ISAIPSSSTV VGTTDLRGAP KTPPGPAQLT
201: IFYGGSVCVY DNVSPEKAQA IMLLAGNAPP VAPNATSTLS PVQAPIPKSL AIDPFVVNQC RNTTPTLASP ISITSHGGTQ SARVSRNTNG VTIIKSIGVL
301: PSPSLKAEPS KVASSIGSFP ASLVPSAVPQ ARKASLARFL EKRKERVISA SPYPPNSKQS PECSTPELGS RSLSMNSSGS CPPHIINLVK
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.