Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022254.1-P | Field mustard | nucleus | 78.12 | 82.09 |
| CDX92171 | Canola | nucleus | 75.28 | 78.87 |
| CDX95810 | Canola | nucleus | 74.72 | 78.51 |
| AT1G48500.1 | Thale cress | nucleus | 41.19 | 46.77 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 36.93 | 32.83 |
| Solyc03g118540.2.1 | Tomato | cytosol | 30.11 | 32.52 |
| KRH39044 | Soybean | nucleus | 35.51 | 32.38 |
| PGSC0003DMT400074101 | Potato | nucleus | 23.01 | 32.02 |
| Solyc06g068930.1.1 | Tomato | nucleus | 21.88 | 31.3 |
| PGSC0003DMT400036790 | Potato | cytosol | 32.95 | 29.74 |
| AT1G70700.3 | Thale cress | cytosol | 19.89 | 25.36 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 27.84 | 23.9 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 27.56 | 23.66 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 26.99 | 22.89 |
| Zm00001d032009_P001 | Maize | plastid | 8.52 | 22.39 |
| Os08t0428400-01 | Rice | nucleus | 25.28 | 20.84 |
| EER98873 | Sorghum | nucleus | 23.86 | 20.59 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 23.86 | 20.54 |
| Zm00001d020409_P002 | Maize | nucleus | 23.86 | 20.34 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 23.01 | 19.38 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 22.73 | 19.23 |
| EES15016 | Sorghum | cytosol | 22.44 | 18.46 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 15.34 | 17.88 |
| HORVU5Hr1G060730.3 | Barley | plastid | 21.31 | 17.48 |
| Zm00001d050365_P006 | Maize | nucleus | 20.45 | 16.44 |
| TraesCSU01G139000.1 | Wheat | nucleus | 16.76 | 16.39 |
| TraesCSU01G139100.1 | Wheat | nucleus | 16.19 | 16.15 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 15.62 | 15.49 |
| HORVU4Hr1G087520.3 | Barley | plastid | 15.06 | 15.32 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 15.06 | 14.97 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 18.75 | 12.24 |
Protein Annotations
| MapMan:15.5.45 | EntrezGene:821055 | ProteinID:AEE76016.1 | ProteinID:AEE76018.1 | EMBL:AF372907 | EMBL:AK222169 |
| ProteinID:ANM65112.1 | ArrayExpress:AT3G17860 | EnsemblPlantsGene:AT3G17860 | RefSeq:AT3G17860 | TAIR:AT3G17860 | RefSeq:AT3G17860-TAIR-G |
| EnsemblPlants:AT3G17860.1 | TAIR:AT3G17860.1 | EMBL:AY085082 | Unigene:At.8035 | ProteinID:BAB02709.1 | EMBL:BT003044 |
| InterPro:CCT_CS | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009867 | GO:GO:0009987 | GO:GO:0031347 |
| GO:GO:0042802 | GO:GO:1903507 | GO:GO:2000022 | InterPro:IPR010399 | Symbol:JAZ3 | RefSeq:NP_001078174.1 |
| RefSeq:NP_001327107.1 | RefSeq:NP_566590.1 | PFAM:PF06200 | PFAM:PF09425 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51320 | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF14 | UniProt:Q9LVI4 | SMART:SM00979 | InterPro:Tify_dom |
| UniParc:UPI000000BEAD | SEG:seg | : | : | : | : |
Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
Coordinates
chr3:+:6119707..6123044
Molecular Weight (calculated)
37748.3 Da
IEP (calculated)
9.528
GRAVY (calculated)
-0.457
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.