Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g068930.1.1 | Tomato | nucleus | 58.5 | 60.16 |
| PGSC0003DMT400036790 | Potato | cytosol | 44.27 | 28.72 |
| CDY72405 | Canola | plastid | 15.02 | 24.52 |
| AT1G48500.1 | Thale cress | nucleus | 29.25 | 23.87 |
| Bra021281.1-P | Field mustard | nucleus | 33.2 | 23.8 |
| CDY18478 | Canola | nucleus | 33.2 | 23.8 |
| CDX95810 | Canola | nucleus | 31.23 | 23.58 |
| Bra022254.1-P | Field mustard | nucleus | 30.83 | 23.28 |
| CDX92171 | Canola | nucleus | 30.83 | 23.21 |
| AT3G17860.1 | Thale cress | nucleus | 32.02 | 23.01 |
| KRH39044 | Soybean | nucleus | 33.6 | 22.02 |
| PGSC0003DMT400081778 | Potato | cytosol | 27.27 | 20.41 |
| Zm00001d032009_P001 | Maize | plastid | 10.67 | 20.15 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 28.06 | 17.93 |
| Zm00001d020409_P002 | Maize | nucleus | 29.25 | 17.92 |
| EER98873 | Sorghum | nucleus | 28.85 | 17.89 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 28.46 | 17.56 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 28.46 | 17.56 |
| TraesCSU01G139100.1 | Wheat | nucleus | 23.32 | 16.71 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 22.53 | 16.1 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 25.69 | 15.66 |
| Os08t0428400-01 | Rice | nucleus | 26.09 | 15.46 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 24.9 | 15.4 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 24.9 | 15.14 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 24.9 | 15.07 |
| HORVU5Hr1G060730.3 | Barley | plastid | 25.3 | 14.92 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 17.39 | 14.57 |
| TraesCSU01G139000.1 | Wheat | nucleus | 20.16 | 14.17 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 19.76 | 14.08 |
| EES15016 | Sorghum | cytosol | 23.72 | 14.02 |
| HORVU4Hr1G087520.3 | Barley | plastid | 18.18 | 13.29 |
| Zm00001d050365_P006 | Maize | nucleus | 22.13 | 12.79 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 24.51 | 11.5 |
Protein Annotations
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028800]
Coordinates
chr6:+:50638455..50642324
Molecular Weight (calculated)
27462.2 Da
IEP (calculated)
10.227
GRAVY (calculated)
-0.596
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLTVKQEIL EEPATDPAGS TSSAMHWSFS NKAHPQYHLS FKGQENNNNN KPKIGFESLA SAGLVTITTT TDIVDTIHRP YSTQIGAHHV PTRNGVVGTT
101: ELRSAPRTSP GPAQLTMFYA GSVCVYDNIS PEKAQAIMLL AGNAPISTTI RNFPSHDHNN NNTNETTITR SIRVLKSPSN TTEVSKIESR QPPSHNLSAV
201: PQARRASLAR FLERRKERVV NASPYGNGKQ SSQHMMNFTI NSSGSSTPLP ATN
101: ELRSAPRTSP GPAQLTMFYA GSVCVYDNIS PEKAQAIMLL AGNAPISTTI RNFPSHDHNN NNTNETTITR SIRVLKSPSN TTEVSKIESR QPPSHNLSAV
201: PQARRASLAR FLERRKERVV NASPYGNGKQ SSQHMMNFTI NSSGSSTPLP ATN
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.