Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15016 | Sorghum | cytosol | 49.41 | 49.3 |
| Zm00001d050365_P006 | Maize | nucleus | 42.15 | 41.1 |
| TraesCSU01G139000.1 | Wheat | nucleus | 32.55 | 38.61 |
| TraesCSU01G139100.1 | Wheat | nucleus | 30.21 | 36.54 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 29.51 | 35.59 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 24.12 | 34.11 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 28.1 | 33.8 |
| HORVU4Hr1G087520.3 | Barley | plastid | 26.0 | 32.08 |
| CDX95570 | Canola | plastid | 11.01 | 31.33 |
| Solyc03g118540.2.1 | Tomato | cytosol | 22.01 | 28.83 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 27.63 | 28.78 |
| Solyc01g005440.2.1 | Tomato | cytosol | 19.91 | 27.51 |
| PGSC0003DMT400081778 | Potato | cytosol | 21.31 | 26.92 |
| AT1G48500.1 | Thale cress | nucleus | 19.44 | 26.77 |
| KRH38274 | Soybean | cytosol | 19.91 | 26.65 |
| Solyc06g068930.1.1 | Tomato | nucleus | 15.22 | 26.42 |
| KRH60357 | Soybean | nucleus | 22.95 | 26.42 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 25.53 | 26.27 |
| PGSC0003DMT400074101 | Potato | nucleus | 15.46 | 26.09 |
| Bra021281.1-P | Field mustard | nucleus | 21.55 | 26.06 |
| Bra007937.1-P | Field mustard | nucleus | 15.22 | 26.0 |
| Bra022254.1-P | Field mustard | nucleus | 20.37 | 25.97 |
| PGSC0003DMT400036790 | Potato | cytosol | 23.65 | 25.9 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 24.82 | 25.85 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 23.18 | 25.78 |
| KRH41663 | Soybean | cytosol | 22.25 | 25.75 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 13.11 | 25.45 |
| AT3G17860.1 | Thale cress | nucleus | 20.84 | 25.28 |
| Bra016193.1-P | Field mustard | nucleus | 14.52 | 24.9 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 22.25 | 23.99 |
| AT1G70700.3 | Thale cress | cytosol | 15.22 | 23.55 |
| KRH39044 | Soybean | nucleus | 19.91 | 22.02 |
Protein Annotations
| MapMan:35.1 | EntrezGene:4345625 | ProteinID:BAD01195.1 | ProteinID:BAF23763.1 | ProteinID:BAT05529.1 | InterPro:CCT_CS |
| ProteinID:EEE68725.1 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0031347 | GO:GO:1903507 | GO:GO:2000022 |
| EMBL:HQ858803 | InterPro:IPR010399 | EnsemblPlantsGene:Os08g0428400 | EnsemblPlants:Os08t0428400-01 | PFAM:PF06200 | PFAM:PF09425 |
| PFscan:PS51320 | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF14 | UniProt:Q6ZJU3 | SMART:SM00979 | InterPro:Tify_dom |
| UniParc:UPI0000212F88 | RefSeq:XP_015651050.1 | SEG:seg | : | : | : |
Description
TIFY GENE 6ATify domain containing protein. (Os08t0428400-01);Similar to ZIM motif family protein. (Os08t0428400-02)
Coordinates
chr8:-:20625115..20627940
Molecular Weight (calculated)
44852.6 Da
IEP (calculated)
9.945
GRAVY (calculated)
-0.399
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGAIW RKEEAAGKPE EHSDYRGGGG GASAAMQWQF PATKVGAASS AFMSFRSSAA AAREEDPKEA AVFDRFSLSG FRPPPRPSPG DAFDGAAAMK
101: QRQFGFNGRQ QYAAAAQHGH REQGVDSYGV AAPHHFPSPS PSPRHPVPFG HANPMLRVHS LPNVAGGSPY RNQSFSVGNS VAGSTVGVYG GPRDLQNPKV
201: TQMTIFYDGL VNVFDNIPVE KAQELMLLAS RASIPSPPSA ARKSDSPISA AAKLTVPEAL PARQIVVQKP EASVPLVSGV SNPITIVSQA VTLPKSFSSS
301: NDSAGPKSGG LPLAVTPLSQ ASPSQPIPVA TTNASAIMPR AVPQARKASL ARFLEKRKER VSSVAPYPSS KSPLESSDTI GSPSTPSKSS CTDITPSTNN
401: CEDSLCLGQP RNISFSSQEP PSTKLQI
101: QRQFGFNGRQ QYAAAAQHGH REQGVDSYGV AAPHHFPSPS PSPRHPVPFG HANPMLRVHS LPNVAGGSPY RNQSFSVGNS VAGSTVGVYG GPRDLQNPKV
201: TQMTIFYDGL VNVFDNIPVE KAQELMLLAS RASIPSPPSA ARKSDSPISA AAKLTVPEAL PARQIVVQKP EASVPLVSGV SNPITIVSQA VTLPKSFSSS
301: NDSAGPKSGG LPLAVTPLSQ ASPSQPIPVA TTNASAIMPR AVPQARKASL ARFLEKRKER VSSVAPYPSS KSPLESSDTI GSPSTPSKSS CTDITPSTNN
401: CEDSLCLGQP RNISFSSQEP PSTKLQI
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.