CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41663	Soybean	cytosol	77.63	78.05
KRH38274	Soybean	cytosol	53.64	62.38
VIT_01s0011g05560.t01	Wine grape	cytosol	59.57	57.55
Solyc01g005440.2.1	Tomato	cytosol	36.12	43.37
PGSC0003DMT400081778	Potato	cytosol	38.81	42.6
KRH39044	Soybean	nucleus	33.96	32.64
GSMUA_Achr9P15630_001	Banana	cytosol	32.88	29.76
GSMUA_Achr7P12530_001	Banana	nucleus	31.0	28.05
GSMUA_Achr5P05900_001	Banana	nucleus	29.92	26.75
Zm00001d020409_P002	Maize	nucleus	26.15	23.49
Os08t0428400-01	Rice	nucleus	26.42	22.95
TraesCS5D01G211200.2	Wheat	nucleus	25.61	22.73
EER98873	Sorghum	nucleus	24.8	22.55
TraesCS5A01G204900.1	Wheat	nucleus	24.8	22.49
TraesCS5B01G203400.2	Wheat	nucleus	25.07	22.36
TraesCS5A01G533100.1	Wheat	nucleus	17.52	21.52
HORVU5Hr1G060730.3	Barley	plastid	24.26	20.98
Zm00001d032009_P001	Maize	plastid	7.55	20.9
Zm00001d050365_P006	Maize	nucleus	23.99	20.32
EES15016	Sorghum	cytosol	23.18	20.09
TraesCSU01G139100.1	Wheat	nucleus	16.98	17.85
TraesCS4B01G364700.1	Wheat	nucleus	16.71	17.51
TraesCSU01G139000.1	Wheat	nucleus	16.98	17.5
HORVU4Hr1G087520.3	Barley	plastid	15.9	17.05
TraesCS5A01G533000.1	Wheat	nucleus	15.9	16.62
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	23.18	15.96

Protein Annotations

EntrezGene:100807043	MapMan:15.5.45	EMBL:ACUP02003364	InterPro:CCT_CS	EnsemblPlantsGene:GLYMA_05G235500	GO:GO:0003674
GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022
UniProt:I1K5P7	InterPro:IPR010399	EnsemblPlants:KRH60357	ProteinID:KRH60357	ProteinID:KRH60357.1	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF37	SMART:SM00979	InterPro:Tify_dom
UniParc:UPI00023C5474	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:41222020..41225905

Molecular Weight (calculated)

39016.2 Da

IEP (calculated)

8.889

GRAVY (calculated)

-0.230

Length

371 amino acids

Sequence
(BLAST)

001: MERDFMGLNL KEPLAVVKEE MNNDGCKNSG FKKGRIAQWP FSNKVSALPH LMSFKASQDD KTKNTVSDTL SSSGFMSILS QEAFDTSQKR SAGEPQKSFN
101: HDGQGDLHFS LTSYPVQHDV NHPHDVKMFS VPNQAISVSL GNPFLKNHFA AAGQKPLLGG IPVTTSHSVL PSAVAVAGMT ESCNSVKPSA QLTIFYAGTV
201: NIFDDISAEK AQAIMLLAGN SLSAASNMAQ PNVQVPISKL GAGAGVPVSQ PANTSPGSGL SSPLSVSSHT GVQSGSGLTS TDEFLAAKTT GVPNTPICNV
301: EPPKVVSATT MLTSAVPQAR KASLARFLEK RKERVMSAAP YNLNKKSEEC ATAEYAGVNF SATNTVLAKQ G

Best Arabidopsis Sequence Match ( AT1G48500.1 )
(BLAST)

001: MERDFLGLGS KLSPITVKEE TNEDSAPSRG MMDWSFSSKV GSGPQFLSFG TSQQETRVNT VNDHLLSSAA MDQNQRTYFS SLQEDRVFPG SSQQDQTTIT
101: VSMSEPNYIN SFINHQHLGG SPIMAPPVSV FPAPTTIRSS SKPLPPQLTI FYAGSVLVYQ DIAPEKAQAI MLLAGNGPHA KPVSQPKPQK LVHHSLPTTD
201: PPTMPPSFLP SISYIVSETR SSGSNGVTGL GPTKTKASLA STRNNQTAAF SMAPTVGLPQ TRKASLARFL EKRKERVINV SPYYVDNKSS IDCRTLMSEC
301: VSCPPAHHLH

Arabidopsis Description

TIFY6AProtein TIFY 6A [Source:UniProtKB/Swiss-Prot;Acc:Q58G47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.