Factsheet for Solyc01g005440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081778	Potato	cytosol	91.59	83.73
VIT_01s0011g05560.t01	Wine grape	cytosol	49.51	39.84
KRH38274	Soybean	cytosol	40.45	39.19
KRH60357	Soybean	nucleus	43.37	36.12
KRH41663	Soybean	cytosol	41.1	34.42
Solyc03g118540.2.1	Tomato	cytosol	33.33	31.6
Solyc06g068930.1.1	Tomato	nucleus	21.04	26.42
GSMUA_Achr9P15630_001	Banana	cytosol	32.36	24.39
GSMUA_Achr5P05900_001	Banana	nucleus	30.74	22.89
GSMUA_Achr7P12530_001	Banana	nucleus	28.16	21.22
TraesCS5A01G204900.1	Wheat	nucleus	27.83	21.03
TraesCS5D01G211200.2	Wheat	nucleus	27.83	20.57
TraesCS5B01G203400.2	Wheat	nucleus	27.51	20.43
EER98873	Sorghum	nucleus	26.54	20.1
Os08t0428400-01	Rice	nucleus	27.51	19.91
TraesCS5A01G533100.1	Wheat	nucleus	19.42	19.87
Zm00001d020409_P002	Maize	nucleus	26.54	19.85
Zm00001d032009_P001	Maize	plastid	8.41	19.4
HORVU5Hr1G060730.3	Barley	plastid	26.54	19.11
TraesCSU01G139000.1	Wheat	nucleus	21.04	18.06
Zm00001d050365_P006	Maize	nucleus	25.57	18.04
TraesCSU01G139100.1	Wheat	nucleus	20.06	17.56
EES15016	Sorghum	cytosol	23.62	17.06
HORVU4Hr1G087520.3	Barley	plastid	19.09	17.05
TraesCS5A01G533000.1	Wheat	nucleus	19.09	16.62
TraesCS4B01G364700.1	Wheat	nucleus	18.45	16.1
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	23.3	13.36

Protein Annotations

MapMan:15.5.45	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987
GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K4ASB1	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF37	SMART:SM00979	EnsemblPlantsGene:Solyc01g005440.2
EnsemblPlants:Solyc01g005440.2.1	InterPro:Tify_dom	UniParc:UPI0002761ACE	:	:	:

Description

No Description!

Coordinates

chr1:+:308888..312423

Molecular Weight (calculated)

32425.9 Da

IEP (calculated)

9.189

GRAVY (calculated)

-0.233

Length

309 amino acids

Sequence
(BLAST)

001: MERDFMGLNI KDSLLVVKDE PVESSKDSGF RWPMSSKVGV PHFMSLNSAQ DENTFKALSA TDGVDAGLKR QPGELQMKQV LGGIPVTAPH SMLPSRGSVA
101: GTTEPWFNSK GSAAPAQLTI FYGGMVNVFE DISPEKAQAI MFLAGHGCAP PNVVQPRFQL QASASKPAAA DGVCVNQTPN MLPASGLSSP MSVSSHPIGQ
201: SDGSSGNKDD MKMSKTANIS VTPHVKLDTS KIVTSLGPVG ATTIMTAGMA SVPQARKASL ARFLEKRKER VMNLAPYGLS KKSPECSTPE SNGVGFSATS
301: TPLLAGKET

Best Arabidopsis Sequence Match ( AT3G17860.1 )
(BLAST)

001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT

Arabidopsis Description

TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.