CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60357	Soybean	nucleus	62.38	53.64
KRH41663	Soybean	cytosol	58.31	50.41
VIT_01s0011g05560.t01	Wine grape	cytosol	53.6	44.53
Solyc01g005440.2.1	Tomato	cytosol	39.19	40.45
PGSC0003DMT400081778	Potato	cytosol	40.75	38.46
KRH39044	Soybean	nucleus	32.92	27.2
GSMUA_Achr9P15630_001	Banana	cytosol	31.35	24.39
GSMUA_Achr7P12530_001	Banana	nucleus	31.03	24.15
GSMUA_Achr5P05900_001	Banana	nucleus	31.03	23.86
Zm00001d020409_P002	Maize	nucleus	27.9	21.55
TraesCS5A01G204900.1	Wheat	nucleus	27.27	21.27
EER98873	Sorghum	nucleus	26.96	21.08
TraesCS5D01G211200.2	Wheat	nucleus	27.27	20.81
TraesCS5B01G203400.2	Wheat	nucleus	26.96	20.67
Os08t0428400-01	Rice	nucleus	26.65	19.91
HORVU5Hr1G060730.3	Barley	plastid	26.02	19.35
TraesCS5A01G533100.1	Wheat	nucleus	17.87	18.87
Zm00001d032009_P001	Maize	plastid	7.84	18.66
Zm00001d050365_P006	Maize	nucleus	25.39	18.49
EES15016	Sorghum	cytosol	24.45	18.22
TraesCSU01G139100.1	Wheat	nucleus	20.06	18.13
TraesCSU01G139000.1	Wheat	nucleus	20.06	17.78
TraesCS4B01G364700.1	Wheat	nucleus	19.12	17.23
TraesCS5A01G533000.1	Wheat	nucleus	19.12	17.18
HORVU4Hr1G087520.3	Barley	plastid	17.87	16.47
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	26.33	15.58

Protein Annotations

EntrezGene:100799314	MapMan:15.5.45	EMBL:ACUP02005770	InterPro:CCT_CS	EnsemblPlantsGene:GLYMA_09G123600	GO:GO:0003674
GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022
UniProt:I1L2W4	InterPro:IPR010399	EnsemblPlants:KRH38274	ProteinID:KRH38274	ProteinID:KRH38274.1	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF37	SMART:SM00979	InterPro:Tify_dom
UniParc:UPI0002338478	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:29932825..29936404

Molecular Weight (calculated)

33642.4 Da

IEP (calculated)

9.945

GRAVY (calculated)

-0.169

Length

319 amino acids

Sequence
(BLAST)

001: MERDFLGLSS KEPLAMMKEE MNIDIGSKDT GFTNGAVVKW PFMNKVYVHP LLMSFNPPQV NSVNHPHGMK MFSVPNQAIS VSMGHPSLKN HFATVGQNMN
101: VATVKQPLLG GIPVTVPHSV HPIVGAVAGM TETRVKPSVP APKLTIFYAG TVNVFEDISP EKAQAIMLLA GNGLSAGSNE ASPNVQAPCL KLAVGDGVPV
201: SQPIPPCSGL SSPSSVSSHT GSPSGSGSSS NDEFLAAKTS GGTTSSVNKV ETPKVVNTTT MLTSAVPQAR KASLARFLEK RKERVMNAAP YNLNKKSENV
301: PQQNTMVSNI TASAGDYFR

Best Arabidopsis Sequence Match ( AT3G17860.1 )
(BLAST)

001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT

Arabidopsis Description

TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.