Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P15630_001 | Banana | cytosol | 49.4 | 50.0 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 34.22 | 34.63 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 30.6 | 33.07 |
| KRH38274 | Soybean | cytosol | 23.86 | 31.03 |
| CDY72405 | Canola | plastid | 11.57 | 30.97 |
| PGSC0003DMT400081778 | Potato | cytosol | 25.06 | 30.77 |
| Solyc01g005440.2.1 | Tomato | cytosol | 22.89 | 30.74 |
| KRH60357 | Soybean | nucleus | 26.75 | 29.92 |
| KRH41663 | Soybean | cytosol | 26.02 | 29.27 |
| Solyc03g118540.2.1 | Tomato | cytosol | 22.89 | 29.14 |
| CDY23487 | Canola | cytosol, mitochondrion, nucleus | 14.7 | 28.77 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 28.43 | 28.37 |
| EER98873 | Sorghum | nucleus | 27.71 | 28.19 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 14.7 | 27.73 |
| Bra016193.1-P | Field mustard | nucleus | 16.63 | 27.71 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 27.23 | 27.63 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 27.71 | 27.51 |
| PGSC0003DMT400036790 | Potato | cytosol | 25.78 | 27.44 |
| CDX68335 | Canola | mitochondrion, nucleus, plastid | 13.98 | 27.36 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 26.02 | 27.27 |
| AT3G17860.1 | Thale cress | nucleus | 22.89 | 26.99 |
| CDX96270 | Canola | cytosol | 17.11 | 26.89 |
| CDY18478 | Canola | nucleus | 22.65 | 26.63 |
| Bra021281.1-P | Field mustard | nucleus | 22.41 | 26.35 |
| CDY11556 | Canola | nucleus | 16.87 | 26.32 |
| CDY69855 | Canola | nucleus | 17.35 | 26.28 |
| CDY09470 | Canola | nucleus | 17.35 | 26.28 |
| Bra022254.1-P | Field mustard | nucleus | 21.2 | 26.27 |
| HORVU5Hr1G060730.3 | Barley | plastid | 26.99 | 26.11 |
| Bra007937.1-P | Field mustard | nucleus | 15.66 | 26.0 |
| CDX92171 | Canola | nucleus | 20.96 | 25.89 |
| PGSC0003DMT400074101 | Potato | nucleus | 15.66 | 25.69 |
| CDX95810 | Canola | nucleus | 20.72 | 25.67 |
| KRH39044 | Soybean | nucleus | 23.86 | 25.65 |
| Os08t0428400-01 | Rice | nucleus | 26.27 | 25.53 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 18.55 | 25.5 |
| AT1G48500.1 | Thale cress | nucleus | 18.8 | 25.16 |
| AT1G70700.3 | Thale cress | cytosol | 16.63 | 25.0 |
| EES15016 | Sorghum | cytosol | 25.78 | 25.0 |
| Zm00001d020409_P002 | Maize | nucleus | 24.82 | 24.94 |
| Solyc06g068930.1.1 | Tomato | nucleus | 14.22 | 23.98 |
| Zm00001d050365_P006 | Maize | nucleus | 24.58 | 23.29 |
| TraesCSU01G139100.1 | Wheat | nucleus | 19.76 | 23.23 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 19.76 | 23.16 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 19.04 | 22.25 |
| TraesCSU01G139000.1 | Wheat | nucleus | 18.07 | 20.83 |
| HORVU4Hr1G087520.3 | Barley | plastid | 16.87 | 20.23 |
| Zm00001d032009_P001 | Maize | plastid | 6.27 | 19.4 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 16.63 | 12.8 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P05900_001 | EnsemblPlants:GSMUA_Achr5T05900_001 | EnsemblPlantsGene:GSMUA_Achr5G05900_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| SMART:SM00979 | UniParc:UPI000294D63E | UniProt:M0SW19 | MapMan:15.5.45 | : | : |
Description
Putative Protein TIFY 6B [Source:GMGC_GENE;Acc:GSMUA_Achr5G05900_001]
Coordinates
chr5:+:4397954..4400914
Molecular Weight (calculated)
43598.5 Da
IEP (calculated)
10.164
GRAVY (calculated)
-0.327
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGIHG RDSGNRQDAA LFGGSAVQWP FSNVSTMQPF VFYKAAQEEK ARNYFFDKHS SSSRFHPLPS MAVFEPSQKA SHAVASQKSF GLGRQSINQH
101: PMHGYQPQST GSSLDATTCH MIPVNMGGPF FKVQAAHSGP NIAVTSLEQL PTGGGTAVNS PIGGPAGGAF APRNMPKPSH MTAQLTIFYG GCVNVYDDVP
201: LDKARAIMLL ASKGSNVSSN AINPRSEAPL PAAAPVPAKV LGSNGISTKQ TLIPTPIYVV APCSGLSSPI SVASHARAAA GGGSSNTDDA PRPKAVVAPL
301: VPTGLHDTSK APTTALGSRT ATNNTPRAVP QARKASLARF LEKRKERMTN ALPYPSSCSN MTQDKGGRGF ESCNSPSKSS SAEISLSTYR EDSWFLAHPK
401: SSIGSMESLG TKLTI
101: PMHGYQPQST GSSLDATTCH MIPVNMGGPF FKVQAAHSGP NIAVTSLEQL PTGGGTAVNS PIGGPAGGAF APRNMPKPSH MTAQLTIFYG GCVNVYDDVP
201: LDKARAIMLL ASKGSNVSSN AINPRSEAPL PAAAPVPAKV LGSNGISTKQ TLIPTPIYVV APCSGLSSPI SVASHARAAA GGGSSNTDDA PRPKAVVAPL
301: VPTGLHDTSK APTTALGSRT ATNNTPRAVP QARKASLARF LEKRKERMTN ALPYPSSCSN MTQDKGGRGF ESCNSPSKSS SAEISLSTYR EDSWFLAHPK
401: SSIGSMESLG TKLTI
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.