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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96270 Canola cytosol 79.32 79.92
CDY09470 Canola nucleus 65.79 63.87
CDY69855 Canola nucleus 64.29 62.41
CDY23487 Canola cytosol, mitochondrion, nucleus 44.36 55.66
CDX68335 Canola mitochondrion, nucleus, plastid 43.23 54.25
AT1G70700.3 Thale cress cytosol 49.62 47.83
CDY72405 Canola plastid 16.92 29.03
CDX95570 Canola plastid 15.79 28.0
CDX95810 Canola nucleus 32.71 25.97
CDX92171 Canola nucleus 30.83 24.4
CDY18478 Canola nucleus 31.2 23.51
GSMUA_Achr7P12530_001 Banana nucleus 28.57 18.54
GSMUA_Achr9P15630_001 Banana cytosol 28.2 18.29
GSMUA_Achr5P05900_001 Banana nucleus 26.32 16.87
Protein Annotations
EnsemblPlants:CDY11556EnsemblPlantsGene:GSBRNA2T00049652001InterPro:CCT_CSInterPro:IPR010399InterPro:Tify_domPANTHER:PTHR33077
PANTHER:PTHR33077:SF37PFAM:PF06200PFAM:PF09425PFscan:PS51320ProteinID:CDY11556ProteinID:CDY11556.1
SEG:segSMART:SM00979UniParc:UPI0004EE0542UniProt:A0A078FE89MapMan:15.5.45:
Description
BnaC06g31830DBnaC06g31830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FE89]
Coordinates
chrLK032012:-:98376..100836
Molecular Weight (calculated)
28534.1 Da
IEP (calculated)
10.125
GRAVY (calculated)
-0.320
Length
266 amino acids
Sequence
(BLAST)
001: MERDFLGLSD KLYLNNVKPD VDDDRVGERG LSKKIAKQWG KAKLLPNSSF MPAAADLQCC PVSAASIHRR SQFGGGAFQN ANQLLLGGSV PLTNYSAFRP
101: AFNSSKDPRV ASSGSSPQLT IFYAGTVTVF NDISPDKARA IMLCAGNGLQ GETGESSLKK PLLETERVFY GKQIHKATAA ASSSSATSAD SFSRCKDKHV
201: GAINAMTMIE SFNAGPSNMI PSVPQARKAS LARFLEKRKE RIMSAMPYKK MLLDLSTGES SAASHT
Best Arabidopsis Sequence Match ( AT1G70700.1 )
(BLAST)
001: MERDFLGLSD KQYLSNNVKH EVNDDAVEER GLSTKAAREW GKSKVFATSS FMPSSDFQEA KAFPGAYQWG SVSAANVFRR CQFGGAFQNA TPLLLGGSVP
101: LPTHPSLVPR VASSGSSPQL TIFYGGTISV FNDISPDKAQ AIMLCAGNGL KGETGDSKPV REAERMYGKQ IHNTAATSSS SATHTDNFSR CRDTPVAATN
201: AMSMIESFNA APRNMIPSVP QARKASLARF LEKRKERLMS AMPYKKMLLD LSTGESSGMN YSSTSPT
Arabidopsis Description
JAZ9TIFY domain/Divergent CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8API7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.