Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX96270 | Canola | cytosol | 79.32 | 79.92 |
CDY09470 | Canola | nucleus | 65.79 | 63.87 |
CDY69855 | Canola | nucleus | 64.29 | 62.41 |
CDY23487 | Canola | cytosol, mitochondrion, nucleus | 44.36 | 55.66 |
CDX68335 | Canola | mitochondrion, nucleus, plastid | 43.23 | 54.25 |
AT1G70700.3 | Thale cress | cytosol | 49.62 | 47.83 |
CDY72405 | Canola | plastid | 16.92 | 29.03 |
CDX95570 | Canola | plastid | 15.79 | 28.0 |
CDX95810 | Canola | nucleus | 32.71 | 25.97 |
CDX92171 | Canola | nucleus | 30.83 | 24.4 |
CDY18478 | Canola | nucleus | 31.2 | 23.51 |
GSMUA_Achr7P12530_001 | Banana | nucleus | 28.57 | 18.54 |
GSMUA_Achr9P15630_001 | Banana | cytosol | 28.2 | 18.29 |
GSMUA_Achr5P05900_001 | Banana | nucleus | 26.32 | 16.87 |
Protein Annotations
EnsemblPlants:CDY11556 | EnsemblPlantsGene:GSBRNA2T00049652001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
PANTHER:PTHR33077:SF37 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDY11556 | ProteinID:CDY11556.1 |
SEG:seg | SMART:SM00979 | UniParc:UPI0004EE0542 | UniProt:A0A078FE89 | MapMan:15.5.45 | : |
Description
BnaC06g31830DBnaC06g31830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FE89]
Coordinates
chrLK032012:-:98376..100836
Molecular Weight (calculated)
28534.1 Da
IEP (calculated)
10.125
GRAVY (calculated)
-0.320
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGLSD KLYLNNVKPD VDDDRVGERG LSKKIAKQWG KAKLLPNSSF MPAAADLQCC PVSAASIHRR SQFGGGAFQN ANQLLLGGSV PLTNYSAFRP
101: AFNSSKDPRV ASSGSSPQLT IFYAGTVTVF NDISPDKARA IMLCAGNGLQ GETGESSLKK PLLETERVFY GKQIHKATAA ASSSSATSAD SFSRCKDKHV
201: GAINAMTMIE SFNAGPSNMI PSVPQARKAS LARFLEKRKE RIMSAMPYKK MLLDLSTGES SAASHT
101: AFNSSKDPRV ASSGSSPQLT IFYAGTVTVF NDISPDKARA IMLCAGNGLQ GETGESSLKK PLLETERVFY GKQIHKATAA ASSSSATSAD SFSRCKDKHV
201: GAINAMTMIE SFNAGPSNMI PSVPQARKAS LARFLEKRKE RIMSAMPYKK MLLDLSTGES SAASHT
001: MERDFLGLSD KQYLSNNVKH EVNDDAVEER GLSTKAAREW GKSKVFATSS FMPSSDFQEA KAFPGAYQWG SVSAANVFRR CQFGGAFQNA TPLLLGGSVP
101: LPTHPSLVPR VASSGSSPQL TIFYGGTISV FNDISPDKAQ AIMLCAGNGL KGETGDSKPV REAERMYGKQ IHNTAATSSS SATHTDNFSR CRDTPVAATN
201: AMSMIESFNA APRNMIPSVP QARKASLARF LEKRKERLMS AMPYKKMLLD LSTGESSGMN YSSTSPT
101: LPTHPSLVPR VASSGSSPQL TIFYGGTISV FNDISPDKAQ AIMLCAGNGL KGETGDSKPV REAERMYGKQ IHNTAATSSS SATHTDNFSR CRDTPVAATN
201: AMSMIESFNA APRNMIPSVP QARKASLARF LEKRKERLMS AMPYKKMLLD LSTGESSGMN YSSTSPT
Arabidopsis Description
JAZ9TIFY domain/Divergent CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8API7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.