Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95570 | Canola | plastid | 42.21 | 99.33 |
| CDY72405 | Canola | plastid | 42.78 | 97.42 |
| CDX95810 | Canola | nucleus | 73.37 | 77.31 |
| CDX92171 | Canola | nucleus | 72.8 | 76.49 |
| PGSC0003DMT400074101 | Potato | nucleus | 23.8 | 33.2 |
| CDY23487 | Canola | cytosol, mitochondrion, nucleus | 19.83 | 33.02 |
| CDX68335 | Canola | mitochondrion, nucleus, plastid | 19.55 | 32.55 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 36.26 | 32.32 |
| KRH39044 | Soybean | nucleus | 35.13 | 32.12 |
| Solyc06g068930.1.1 | Tomato | nucleus | 21.81 | 31.3 |
| Solyc03g118540.2.1 | Tomato | cytosol | 28.9 | 31.29 |
| CDY11556 | Canola | nucleus | 23.51 | 31.2 |
| CDY09470 | Canola | nucleus | 23.51 | 30.29 |
| PGSC0003DMT400036790 | Potato | cytosol | 32.29 | 29.23 |
| CDY69855 | Canola | nucleus | 22.66 | 29.2 |
| CDX96270 | Canola | cytosol | 20.68 | 27.65 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 26.91 | 23.17 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 26.35 | 22.68 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 26.63 | 22.65 |
Protein Annotations
| EnsemblPlants:CDY18478 | EnsemblPlantsGene:GSBRNA2T00005482001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDY18478 | ProteinID:CDY18478.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0004EDF5DE | UniProt:A0A078G1J0 | MapMan:15.5.45 | : |
Description
BnaA01g27170DBnaA01g27170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1J0]
Coordinates
chrLK032086:+:13691..16810
Molecular Weight (calculated)
37611.1 Da
IEP (calculated)
9.496
GRAVY (calculated)
-0.388
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP SRGMKWSFPN KASATSSPQF LTFRPSQENR HRNLGNYHLP HSGSFMPSSV ADVYDSSYRS TPYSSVQGVR
101: MFPSSKQHEE AISVSMSRPS LQSHYASGGT SFINNSVNSQ PLVGVPIMAP PVSVLPPPGS IVGTTDIRCS SKPSGSSPAQ LTIFYAGSVC VYNDISPEKA
201: KAIMLLAGNG SPMPQAFLPP QTHQQVVHHA RASVDSSAMP PSFMPTVSYL SPEAGSSSNG FGAAKAARDF TTTYLSNQTN ASNINSSMAA SCSANVPQTV
301: ALPQARKASI ARFLEKRKER VTSLSPYCLD KKSSTDCRTP MSECISSSLS SAT
101: MFPSSKQHEE AISVSMSRPS LQSHYASGGT SFINNSVNSQ PLVGVPIMAP PVSVLPPPGS IVGTTDIRCS SKPSGSSPAQ LTIFYAGSVC VYNDISPEKA
201: KAIMLLAGNG SPMPQAFLPP QTHQQVVHHA RASVDSSAMP PSFMPTVSYL SPEAGSSSNG FGAAKAARDF TTTYLSNQTN ASNINSSMAA SCSANVPQTV
301: ALPQARKASI ARFLEKRKER VTSLSPYCLD KKSSTDCRTP MSECISSSLS SAT
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.