CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68335	Canola	mitochondrion, nucleus, plastid	94.81	94.81
Bra003947.1-P	Field mustard	cytosol, mitochondrion, plastid	95.75	92.27
CDY09470	Canola	nucleus	70.28	54.38
CDY69855	Canola	nucleus	66.98	51.82
CDX96270	Canola	cytosol	58.96	47.35
CDY11556	Canola	nucleus	55.66	44.36
AT1G70700.3	Thale cress	cytosol	51.42	39.49
CDY72405	Canola	plastid	18.4	25.16
CDX95570	Canola	plastid	16.98	24.0
CDX95810	Canola	nucleus	34.43	21.79
CDX92171	Canola	nucleus	32.55	20.54
CDY18478	Canola	nucleus	33.02	19.83
GSMUA_Achr7P12530_001	Banana	nucleus	33.49	17.32
GSMUA_Achr9P15630_001	Banana	cytosol	31.13	16.1
GSMUA_Achr5P05900_001	Banana	nucleus	28.77	14.7

Protein Annotations

EnsemblPlants:CDY23487	EnsemblPlantsGene:GSBRNA2T00022119001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PANTHER:PTHR33077:SF37	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDY23487	ProteinID:CDY23487.1
SEG:seg	SMART:SM00979	UniParc:UPI0004EE7642	UniProt:A0A078GEE6	MapMan:15.5.45	:

Description

BnaC06g24560DBnaC06g24560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEE6]

Coordinates

chrLK032144:-:148925..150517

Molecular Weight (calculated)

23319.5 Da

IEP (calculated)

9.126

GRAVY (calculated)

-0.509

Length

212 amino acids

Sequence
(BLAST)

001: MERDFLGFSD KQYLNNVEDD RVGERGSSTK AARQWGPESA ASIHRRSQYS GAFQNANPQL TIFYAGTVSV FNDISPDKAQ AIMLCAGNGL KIDTGESRLK
101: KPLIETERVY GKQFHNAATA AASSSSATYC DNFSRCGDRP VGATNAMSMI QSFNVDPGYM MPSVPQARKA SLARFLEKRR ERLVNAMPYK KMLLDLLTGE
201: SCGMNYSSAS HT

Best Arabidopsis Sequence Match ( AT1G70700.3 )
(BLAST)

001: MERDFLGLSD KQYLSNNVKH EVNDDAVEER GLSTKAAREW GKSKVFATSS FMPSSDFQEA KAFPGAYQWG SVSAANVFRR CQFGGAFQNA TPLLLGGSVP
101: LPTHPSLVPR VASSGSSPQL TIFYGGTISV FNDISPDKAQ AIMLCAGNGL KGETGDSKPV REAERMYGKQ IHNTAATSSS SATHTDNFSR CRDTPVAATN
201: AMSMIESFNA APRNMIPSVP QARKASLARF LEKRKERFDF VFFFFIENFE VFQLNLKELM LLVQAYECNA IQEDAS

Arabidopsis Description

JAZ9TIFY domain/Divergent CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8API7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.