Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69855 | Canola | nucleus | 93.43 | 93.43 |
| CDY23487 | Canola | cytosol, mitochondrion, nucleus | 54.38 | 70.28 |
| CDX96270 | Canola | cytosol | 66.06 | 68.56 |
| CDX68335 | Canola | mitochondrion, nucleus, plastid | 52.92 | 68.4 |
| CDY11556 | Canola | nucleus | 63.87 | 65.79 |
| AT1G70700.3 | Thale cress | cytosol | 52.92 | 52.54 |
| CDY72405 | Canola | plastid | 16.06 | 28.39 |
| CDX95570 | Canola | plastid | 14.96 | 27.33 |
| CDX95810 | Canola | nucleus | 31.02 | 25.37 |
| CDX92171 | Canola | nucleus | 29.56 | 24.11 |
| CDY18478 | Canola | nucleus | 30.29 | 23.51 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 28.1 | 18.78 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 26.28 | 17.35 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 25.18 | 16.83 |
Protein Annotations
| EnsemblPlants:CDY09470 | EnsemblPlantsGene:GSBRNA2T00030988001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF37 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDY09470 | ProteinID:CDY09470.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0004EF0548 | UniProt:A0A078F4R8 | MapMan:15.5.45 | : |
Description
BnaC02g20120DBnaC02g20120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4R8]
Coordinates
chrLK031996:+:297796..300293
Molecular Weight (calculated)
29421.9 Da
IEP (calculated)
10.514
GRAVY (calculated)
-0.437
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGLSD KKYLSNVKRE ANDDRVGERV LSKKAAIQWG KAKLLPNSNF MPDFQAGSYQ RGPVSAASNL RRSQFSGGAF QNANPPLLGG SVPLTNHSSF
101: RPAFNLSADA RVASSGSLPQ LTIFYGGTVS VFNNISPDKA QAIMLCARNG LKGETGESSL KKPVQETERV YGKQVHNAAA AAASSSSATY ADSFSRCRDR
201: PVGATNAMSM IESFNAAGPG NMIPSVPQAR KASLARFLEK RKERLMSALP YKKMLLDLTT GESSGMNYPS ASHT
101: RPAFNLSADA RVASSGSLPQ LTIFYGGTVS VFNNISPDKA QAIMLCARNG LKGETGESSL KKPVQETERV YGKQVHNAAA AAASSSSATY ADSFSRCRDR
201: PVGATNAMSM IESFNAAGPG NMIPSVPQAR KASLARFLEK RKERLMSALP YKKMLLDLTT GESSGMNYPS ASHT
001: MERDFLGLSD KQYLSNNVKH EVNDDAVEER GLSTKAAREW GKSKVFATSS FMPSSDFQEA KAFPGAYQWG SVSAANVFRR CQFGGAFQNA TPLLLGGSVP
101: LPTHPSLVPR VASSGSSPQL TIFYGGTISV FNDISPDKAQ AIMLCAGNGL KGETGDSKPV REAERMYGKQ IHNTAATSSS SATHTDNFSR CRDTPVAATN
201: AMSMIESFNA APRNMIPSVP QARKASLARF LEKRKERLMS AMPYKKMLLD LSTGESSGMN YSSTSPT
101: LPTHPSLVPR VASSGSSPQL TIFYGGTISV FNDISPDKAQ AIMLCAGNGL KGETGDSKPV REAERMYGKQ IHNTAATSSS SATHTDNFSR CRDTPVAATN
201: AMSMIESFNA APRNMIPSVP QARKASLARF LEKRKERLMS AMPYKKMLLD LSTGESSGMN YSSTSPT
Arabidopsis Description
JAZ9TIFY domain/Divergent CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8API7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.