Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P15630_001 | Banana | cytosol | 39.27 | 39.27 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 34.63 | 34.22 |
| CDY23487 | Canola | cytosol, mitochondrion, nucleus | 17.32 | 33.49 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 31.22 | 33.33 |
| CDX68335 | Canola | mitochondrion, nucleus, plastid | 16.83 | 32.55 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 17.07 | 31.82 |
| Solyc03g118540.2.1 | Tomato | cytosol | 25.12 | 31.6 |
| KRH38274 | Soybean | cytosol | 24.15 | 31.03 |
| KRH60357 | Soybean | nucleus | 28.05 | 31.0 |
| EER98873 | Sorghum | nucleus | 30.0 | 30.15 |
| KRH39044 | Soybean | nucleus | 27.8 | 29.53 |
| KRH41663 | Soybean | cytosol | 26.34 | 29.27 |
| Bra016193.1-P | Field mustard | nucleus | 17.56 | 28.92 |
| CDY11556 | Canola | nucleus | 18.54 | 28.57 |
| Zm00001d020409_P002 | Maize | nucleus | 28.78 | 28.57 |
| PGSC0003DMT400074101 | Potato | nucleus | 17.56 | 28.46 |
| CDX96270 | Canola | cytosol | 18.29 | 28.41 |
| Solyc01g005440.2.1 | Tomato | cytosol | 21.22 | 28.16 |
| PGSC0003DMT400081778 | Potato | cytosol | 23.17 | 28.11 |
| CDY09470 | Canola | nucleus | 18.78 | 28.1 |
| CDY69855 | Canola | nucleus | 18.78 | 28.1 |
| Bra022254.1-P | Field mustard | nucleus | 22.93 | 28.06 |
| Bra007937.1-P | Field mustard | nucleus | 17.07 | 28.0 |
| PGSC0003DMT400036790 | Potato | cytosol | 26.34 | 27.69 |
| AT3G17860.1 | Thale cress | nucleus | 23.66 | 27.56 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 26.59 | 27.53 |
| CDX95810 | Canola | nucleus | 22.44 | 27.46 |
| AT1G48500.1 | Thale cress | nucleus | 20.49 | 27.1 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 27.32 | 26.92 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 26.83 | 26.89 |
| CDY18478 | Canola | nucleus | 22.68 | 26.35 |
| Bra021281.1-P | Field mustard | nucleus | 22.68 | 26.35 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 26.83 | 26.32 |
| CDX92171 | Canola | nucleus | 21.46 | 26.19 |
| AT1G70700.3 | Thale cress | cytosol | 17.56 | 26.09 |
| HORVU5Hr1G060730.3 | Barley | plastid | 26.83 | 25.64 |
| Zm00001d050365_P006 | Maize | nucleus | 27.32 | 25.57 |
| Solyc06g068930.1.1 | Tomato | nucleus | 15.12 | 25.2 |
| EES15016 | Sorghum | cytosol | 26.1 | 25.0 |
| Os08t0428400-01 | Rice | nucleus | 25.85 | 24.82 |
| CDY72405 | Canola | plastid | 9.02 | 23.87 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 19.27 | 22.32 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 16.34 | 22.19 |
| TraesCSU01G139100.1 | Wheat | nucleus | 19.02 | 22.1 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 19.02 | 21.97 |
| TraesCSU01G139000.1 | Wheat | nucleus | 19.02 | 21.67 |
| HORVU4Hr1G087520.3 | Barley | plastid | 16.83 | 19.94 |
| Zm00001d032009_P001 | Maize | plastid | 6.34 | 19.4 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 18.29 | 13.91 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P12530_001 | EnsemblPlants:GSMUA_Achr7T12530_001 | EnsemblPlantsGene:GSMUA_Achr7G12530_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| SMART:SM00979 | UniParc:UPI0002966FA1 | UniProt:M0TGZ1 | MapMan:15.5.45 | : | : |
Description
Putative Protein TIFY 6B [Source:GMGC_GENE;Acc:GSMUA_Achr7G12530_001]
Coordinates
chr7:-:10018932..10021853
Molecular Weight (calculated)
43544.1 Da
IEP (calculated)
9.979
GRAVY (calculated)
-0.318
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MMERDFLGMS GGKEDTKGSR HDAGSAVRWP FTNKASAMQQ FMLHKAAQEE RANKYRFDRL SSPTFHPVSV VDAFEADRSD FSALAQQRSF SLHDYQPQAT
101: TTFSSSTRQS SEAGTFPVVS HHSLPITTNS PFFKIHGTQS APNIMITNLN QQPLAGVALN TPVVNTCVGA LPSWNMPKPA PTSAQLTIFY AGTVNVYDDV
201: SFDKAQAILM LASNGSNGAS NASRSEAPLS VTPLVPPKIS GSDGLNAKQI LNPTPIRVAS PCSVFSNPIP VTLHTVANSS SVSSTKNDSV GAKVVGTLSP
301: STQQGPPRTS SAAVGSITSA AIMPRAVPQA RKASLARFLE KRKERVNDAM PYSCIKKTSE IGSGLESASA SSISSLADVN VSSNREDSSD LRNQKSGISY
401: GDSLSTKLRI
101: TTFSSSTRQS SEAGTFPVVS HHSLPITTNS PFFKIHGTQS APNIMITNLN QQPLAGVALN TPVVNTCVGA LPSWNMPKPA PTSAQLTIFY AGTVNVYDDV
201: SFDKAQAILM LASNGSNGAS NASRSEAPLS VTPLVPPKIS GSDGLNAKQI LNPTPIRVAS PCSVFSNPIP VTLHTVANSS SVSSTKNDSV GAKVVGTLSP
301: STQQGPPRTS SAAVGSITSA AIMPRAVPQA RKASLARFLE KRKERVNDAM PYSCIKKTSE IGSGLESASA SSISSLADVN VSSNREDSSD LRNQKSGISY
401: GDSLSTKLRI
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.