Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022254.1-P | Field mustard | nucleus | 31.09 | 35.82 |
| CDX95810 | Canola | nucleus | 30.83 | 35.52 |
| AT3G17860.1 | Thale cress | nucleus | 32.38 | 35.51 |
| AT1G48500.1 | Thale cress | nucleus | 28.24 | 35.16 |
| Bra021281.1-P | Field mustard | nucleus | 32.12 | 35.13 |
| CDY18478 | Canola | nucleus | 32.12 | 35.13 |
| CDX92171 | Canola | nucleus | 30.05 | 34.52 |
| KRH60357 | Soybean | nucleus | 32.64 | 33.96 |
| Solyc03g118540.2.1 | Tomato | cytosol | 28.5 | 33.74 |
| PGSC0003DMT400074101 | Potato | nucleus | 22.02 | 33.6 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 34.46 | 33.59 |
| KRH38274 | Soybean | cytosol | 27.2 | 32.92 |
| KRH41663 | Soybean | cytosol | 31.09 | 32.52 |
| Solyc06g068930.1.1 | Tomato | nucleus | 19.95 | 31.3 |
| PGSC0003DMT400036790 | Potato | cytosol | 31.61 | 31.28 |
| CDY72405 | Canola | plastid | 11.66 | 29.03 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 29.53 | 27.8 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 27.2 | 25.61 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 25.65 | 23.86 |
| EER98873 | Sorghum | nucleus | 21.5 | 20.34 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 21.5 | 20.29 |
| Os08t0428400-01 | Rice | nucleus | 22.02 | 19.91 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 21.24 | 19.71 |
| Zm00001d032009_P001 | Maize | plastid | 6.74 | 19.4 |
| EES15016 | Sorghum | cytosol | 21.5 | 19.39 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 20.98 | 19.38 |
| Zm00001d020409_P002 | Maize | nucleus | 20.73 | 19.37 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 15.03 | 19.21 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 17.1 | 18.64 |
| Zm00001d050365_P006 | Maize | nucleus | 20.98 | 18.49 |
| HORVU5Hr1G060730.3 | Barley | plastid | 20.47 | 18.41 |
| TraesCSU01G139100.1 | Wheat | nucleus | 16.06 | 17.56 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 15.8 | 17.18 |
| HORVU4Hr1G087520.3 | Barley | plastid | 14.77 | 16.47 |
| TraesCSU01G139000.1 | Wheat | nucleus | 15.29 | 16.39 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 21.24 | 15.21 |
Protein Annotations
| EntrezGene:100807288 | MapMan:15.5.45 | EMBL:ACUP02005908 | InterPro:CCT_CS | EnsemblPlantsGene:GLYMA_09G174200 | GO:GO:0003674 |
| GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0031347 | GO:GO:1903507 | GO:GO:2000022 |
| UniProt:I1L443 | InterPro:IPR010399 | EnsemblPlants:KRH39044 | ProteinID:KRH39044 | ProteinID:KRH39044.1 | PFAM:PF06200 |
| PFAM:PF09425 | PFscan:PS51320 | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF37 | SMART:SM00979 | InterPro:Tify_dom |
| UniParc:UPI0002338D20 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:39883483..39890003
Molecular Weight (calculated)
41541.4 Da
IEP (calculated)
9.888
GRAVY (calculated)
-0.397
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MEREFFGLSS KNGAWTTMKD DAVNKSRDQV RSSGMQWSFP NKVSALPQFL SFKTNQEDKP RKTILEPLAS SGYMAMSTQY AFDSNQKSFL GLTNRNLSIS
101: KHAAGNKQGM TVYPLQCCDA QSEEARIFSV SNQSNQVSPV LQSNLASTGL NMVNSVIKPQ PFGSKSSGTP LSILPSIGSI VGSTDLRNNS KSSTMPTQLT
201: IFYAGSVCVY DDISPEKAKA IMLMAGNGYT PTEKMELPTV KLQPAISIPS KDDGFMISQS YPPSTFPTPL PLTSHVNSQP GGGSSSNKEI SIIRQVGPST
301: APTNHLESPI IGSIGSASKE KAQPVCLPQA RKASLARFLE KRKGRMMRTS PYLYMSKKSP ECSSSGSDSV SFSLNFSGSC SLPATN
101: KHAAGNKQGM TVYPLQCCDA QSEEARIFSV SNQSNQVSPV LQSNLASTGL NMVNSVIKPQ PFGSKSSGTP LSILPSIGSI VGSTDLRNNS KSSTMPTQLT
201: IFYAGSVCVY DDISPEKAKA IMLMAGNGYT PTEKMELPTV KLQPAISIPS KDDGFMISQS YPPSTFPTPL PLTSHVNSQP GGGSSSNKEI SIIRQVGPST
301: APTNHLESPI IGSIGSASKE KAQPVCLPQA RKASLARFLE KRKGRMMRTS PYLYMSKKSP ECSSSGSDSV SFSLNFSGSC SLPATN
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.