Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0083g00450.t01 | Wine grape | mitochondrion | 63.12 | 58.89 |
| CDY12623 | Canola | nucleus | 41.09 | 52.37 |
| Bra034018.1-P | Field mustard | nucleus | 38.61 | 50.98 |
| Bra004207.1-P | Field mustard | nucleus | 43.32 | 50.87 |
| CDX96108 | Canola | cytosol, mitochondrion, nucleus, plastid | 43.32 | 50.87 |
| CDY01786 | Canola | cytosol | 43.81 | 50.86 |
| AT1G67170.1 | Thale cress | nucleus | 44.55 | 50.14 |
| GSMUA_Achr1P19060_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 53.47 | 49.88 |
| Solyc02g065630.2.1 | Tomato | nucleus | 51.49 | 47.06 |
| Os02t0192100-01 | Rice | mitochondrion | 28.71 | 46.4 |
| PGSC0003DMT400068308 | Potato | plastid | 51.73 | 46.24 |
| GSMUA_Achr1P15680_001 | Banana | endoplasmic reticulum, plasma membrane | 23.02 | 39.08 |
| CDY54119 | Canola | mitochondrion | 35.15 | 38.9 |
| HORVU6Hr1G034720.1 | Barley | nucleus | 39.6 | 35.16 |
| TraesCS6A01G169900.1 | Wheat | nucleus | 40.35 | 34.9 |
| TraesCS6D01G159700.1 | Wheat | nucleus | 40.35 | 34.9 |
| TraesCS6B01G198100.1 | Wheat | extracellular, mitochondrion, nucleus, plastid | 40.59 | 34.6 |
| KRH18932 | Soybean | mitochondrion | 22.77 | 32.97 |
| KRH10004 | Soybean | mitochondrion | 22.77 | 31.83 |
| EES06432 | Sorghum | mitochondrion | 39.11 | 31.66 |
| KRH43428 | Soybean | endoplasmic reticulum | 24.5 | 30.09 |
| KRH13877 | Soybean | nucleus | 24.01 | 29.94 |
| KRG92122 | Soybean | plastid | 9.9 | 28.78 |
| KRH23325 | Soybean | nucleus | 23.02 | 28.27 |
| KRH17098 | Soybean | plastid | 18.81 | 26.76 |
| KRH72743 | Soybean | mitochondrion | 18.56 | 25.34 |
Protein Annotations
| EMBL:ACUP02011515 | EnsemblPlants:KRH01477 | EnsemblPlantsGene:GLYMA_18G279600 | EntrezGene:100783811 | ncoils:Coil | PANTHER:PTHR33405 |
| PANTHER:PTHR33405:SF5 | ProteinID:KRH01477 | ProteinID:KRH01477.1 | ProteinID:KRH01478.1 | SEG:seg | UniParc:UPI000233F3EC |
| UniProt:K7MV63 | MapMan:35.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:+:56054299..56061027
Molecular Weight (calculated)
43615.0 Da
IEP (calculated)
7.242
GRAVY (calculated)
-0.781
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKGRMPPP PHLRRPHPQD PAAMPHPLVV PFDFLPPPQV MEQKLASQHA EMQRLSTENQ RLAATHSVLR QELAAAQHEM QMLHGHVVAL KGEREQQIRA
101: QMEKIAKMES EAQGSESVKM ELQQARGEAQ NLVVSRDELV SKAQHLTQEL QRVHADAVQI PALISEFECL RQEYQHCRAT FDYEKNLYND HLESLQVMEK
201: NYVSMSREVE KLRAELTNTA NVDRRSSGPY GGTSGTNENE ASGLPVGQNA YEDGYSVMQG RGPLPAAAGS GGGNATTITT AGGQPGPAPA GTGYDAPIGP
301: GYGASTGSTY DAQRGATYDT QRLTGSNAFR GSAYDSKRGS GYDMQRAPAY DAPRAAGYDA QSRGVAGPHG HARPMNNMPY GSTTPPARSG GGYEPARGVN
401: PARR
101: QMEKIAKMES EAQGSESVKM ELQQARGEAQ NLVVSRDELV SKAQHLTQEL QRVHADAVQI PALISEFECL RQEYQHCRAT FDYEKNLYND HLESLQVMEK
201: NYVSMSREVE KLRAELTNTA NVDRRSSGPY GGTSGTNENE ASGLPVGQNA YEDGYSVMQG RGPLPAAAGS GGGNATTITT AGGQPGPAPA GTGYDAPIGP
301: GYGASTGSTY DAQRGATYDT QRLTGSNAFR GSAYDSKRGS GYDMQRAPAY DAPRAAGYDA QSRGVAGPHG HARPMNNMPY GSTTPPARSG GGYEPARGVN
401: PARR
001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
Arabidopsis Description
FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.