Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH43428 | Soybean | endoplasmic reticulum | 94.75 | 93.31 |
| GSMUA_Achr9P19990_001 | Banana | cytosol | 36.42 | 63.1 |
| Solyc07g062110.2.1 | Tomato | nucleus | 61.11 | 62.07 |
| VIT_19s0014g00260.t01 | Wine grape | cytosol, mitochondrion, nucleus | 56.48 | 59.03 |
| CDX98491 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 54.94 | 54.77 |
| CDX97599 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 54.32 | 54.32 |
| AT3G14750.1 | Thale cress | nucleus, plastid | 54.32 | 53.17 |
| Bra027313.1-P | Field mustard | cytosol, mitochondrion, nucleus, peroxisome | 54.01 | 53.03 |
| Bra027315.1-P | Field mustard | cytosol, mitochondrion, nucleus, peroxisome | 54.01 | 52.71 |
| Zm00001d021587_P002 | Maize | mitochondrion | 46.91 | 43.06 |
| KXG36288 | Sorghum | mitochondrion | 46.91 | 42.94 |
| TraesCS2A01G226300.1 | Wheat | nucleus | 45.37 | 42.49 |
| Os07t0508200-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 46.3 | 42.13 |
| TraesCS2D01G231800.1 | Wheat | mitochondrion | 44.75 | 41.91 |
| KRH17098 | Soybean | plastid | 36.42 | 41.55 |
| KRG92122 | Soybean | plastid | 16.98 | 39.57 |
| HORVU2Hr1G047850.4 | Barley | mitochondrion | 45.37 | 39.52 |
| TraesCS2B01G249600.3 | Wheat | plastid | 45.06 | 39.35 |
| KRH72743 | Soybean | mitochondrion | 35.19 | 38.51 |
| KRH10004 | Soybean | mitochondrion | 32.72 | 36.68 |
| KRH23325 | Soybean | nucleus | 33.02 | 32.52 |
| KRH18932 | Soybean | mitochondrion | 25.0 | 29.03 |
| KRH01477 | Soybean | nucleus | 29.94 | 24.01 |
Protein Annotations
| EMBL:ACUP02009794 | EnsemblPlants:KRH13877 | EnsemblPlantsGene:GLYMA_15G269300 | EntrezGene:100779805 | ncoils:Coil | PANTHER:PTHR33405 |
| PANTHER:PTHR33405:SF7 | ProteinID:KRH13877 | ProteinID:KRH13877.1 | SEG:seg | UniParc:UPI000233BFDB | UniProt:A0A0R0GGG5 |
| MapMan:35.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr15:+:50629544..50632587
Molecular Weight (calculated)
35462.0 Da
IEP (calculated)
7.064
GRAVY (calculated)
-0.644
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGRNRGQPL PPPHAAGLSP PLHDQLYGAR AHHHHHLVGP VPPHPHHLLE DFRDSQLGLG PPRGGPIPLH PAAIIEERLA AQHQDIQGLL GDNQRLAATH
101: VALKQELEAA RHELQRVAHF RDSLRADTEA RMPELHDKAA QLEAELCGAE AARTELLQVR ADVKELTAVR QDLSGQVQAM TQDLARMTTD AKRVPALRAD
201: VEAMKQELQC ARAAIEYEKK GFAENYEHGQ VMEKKLVAMA REMEKLRAEI ANAEKRARAA VAAGNPGQGY NANYGNADAG YAGNPYPSIY GMNPVQPGVE
301: NFPHYGPGPA AWGAYDMQRA QGHR
101: VALKQELEAA RHELQRVAHF RDSLRADTEA RMPELHDKAA QLEAELCGAE AARTELLQVR ADVKELTAVR QDLSGQVQAM TQDLARMTTD AKRVPALRAD
201: VEAMKQELQC ARAAIEYEKK GFAENYEHGQ VMEKKLVAMA REMEKLRAEI ANAEKRARAA VAAGNPGQGY NANYGNADAG YAGNPYPSIY GMNPVQPGVE
301: NFPHYGPGPA AWGAYDMQRA QGHR
001: MSGRNRGPPP PSMKGGSYSG LQAPVHQPPF VRGLGGGPVP PPPHPSMIDD SREPQFRVDA RGLPPQFSIL EDRLAAQNQD VQGLLADNQR LAATHVALKQ
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R
Arabidopsis Description
FLXL1Protein FLX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V84]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.