Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH10004 | Soybean | mitochondrion | 83.89 | 95.5 |
| Solyc03g121500.2.1 | Tomato | cytosol, nucleus | 51.06 | 67.2 |
| PGSC0003DMT400006407 | Potato | mitochondrion, nucleus | 56.23 | 66.55 |
| GSMUA_Achr8P21750_001 | Banana | nucleus | 51.06 | 60.0 |
| VIT_09s0002g02070.t01 | Wine grape | mitochondrion | 66.26 | 59.89 |
| GSMUA_Achr10P... | Banana | cytosol | 49.24 | 52.94 |
| CDY24052 | Canola | nucleus | 42.86 | 51.84 |
| CDY33066 | Canola | nucleus | 42.25 | 51.1 |
| Bra037981.1-P | Field mustard | nucleus | 42.25 | 51.1 |
| AT1G55170.1 | Thale cress | nucleus | 43.16 | 50.18 |
| Os12t0193100-03 | Rice | nucleus | 37.39 | 39.3 |
| TraesCS5D01G118100.2 | Wheat | nucleus | 38.6 | 39.08 |
| TraesCS5B01G113500.2 | Wheat | nucleus | 38.6 | 39.08 |
| TraesCS5A01G121400.1 | Wheat | nucleus | 38.3 | 38.77 |
| Bra014359.1-P | Field mustard | nucleus | 36.17 | 36.28 |
| CDY08227 | Canola | nucleus | 35.87 | 35.98 |
| OQU78707 | Sorghum | nucleus | 37.69 | 35.53 |
| KXG23194 | Sorghum | nucleus | 37.69 | 35.43 |
| KRH43428 | Soybean | endoplasmic reticulum | 33.74 | 33.74 |
| Zm00001d044699_P002 | Maize | nucleus | 35.56 | 33.43 |
| KRH13877 | Soybean | nucleus | 32.52 | 33.02 |
| KRH17098 | Soybean | plastid | 24.62 | 28.52 |
| KRH72743 | Soybean | mitochondrion | 24.62 | 27.36 |
| KRH18932 | Soybean | mitochondrion | 23.1 | 27.24 |
| KRG92122 | Soybean | plastid | 10.64 | 25.18 |
| KRH01477 | Soybean | nucleus | 28.27 | 23.02 |
Protein Annotations
| EMBL:ACUP02008462 | EnsemblPlants:KRH23325 | EnsemblPlantsGene:GLYMA_13G350800 | EntrezGene:100787621 | ncoils:Coil | PANTHER:PTHR33405 |
| PANTHER:PTHR33405:SF2 | ProteinID:KRH23325 | ProteinID:KRH23325.1 | SEG:seg | UniParc:UPI0006ED6291 | UniProt:A0A0R0GY69 |
| MapMan:35.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:+:44026977..44028831
Molecular Weight (calculated)
37354.1 Da
IEP (calculated)
9.298
GRAVY (calculated)
-0.736
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQYNSALGS ILYSFIHCSA CWVCRVRVRC SIGEDPFPSR RSLEMASRHR VHREPLNARR GYPPEGPYAR VPPMPRPPPP IPPHPAVLEE ELEFQHAEMR
101: RLVADNRRLI DDRMALQRDL GAAKEELHRM NLAIGDIRAE HEAHSRELVE KGMKMEADLR ANEPLKNEVM QLRSEVKKLN NLKQELTGKV QTLTQDVARL
201: QADNQQIPMM RAEIDGLHQE LMRARTMVDY EKKANMEFME QRQSMEKNLV SMAREVEKLR AELASADSRH WGGGMSGGPY GTKFGSPEGF PAPYADGYGV
301: HLGAADKGPM YGVGAASRKG HEKPRMNRR
101: RLVADNRRLI DDRMALQRDL GAAKEELHRM NLAIGDIRAE HEAHSRELVE KGMKMEADLR ANEPLKNEVM QLRSEVKKLN NLKQELTGKV QTLTQDVARL
201: QADNQQIPMM RAEIDGLHQE LMRARTMVDY EKKANMEFME QRQSMEKNLV SMAREVEKLR AELASADSRH WGGGMSGGPY GTKFGSPEGF PAPYADGYGV
301: HLGAADKGPM YGVGAASRKG HEKPRMNRR
001: MSGRNRIHRD IRDSYHDHRD LPPERPFLRG PPLLQPPPPS LLEDLQIQEG EIRRQDAEIR RLLSDNHGLA DDRMVLEREL VAAKEELHRM NLMISDLRAE
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH
Arabidopsis Description
FLXL3Protein FLX-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C717]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.