Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006407 | Potato | mitochondrion, nucleus | 97.6 | 87.77 |
| KRH10004 | Soybean | mitochondrion | 66.4 | 57.44 |
| KRH23325 | Soybean | nucleus | 67.2 | 51.06 |
| GSMUA_Achr8P21750_001 | Banana | nucleus | 56.8 | 50.71 |
| VIT_09s0002g02070.t01 | Wine grape | mitochondrion | 69.2 | 47.53 |
| GSMUA_Achr10P... | Banana | cytosol | 56.8 | 46.41 |
| CDY24052 | Canola | nucleus | 49.2 | 45.22 |
| AT1G55170.1 | Thale cress | nucleus | 50.8 | 44.88 |
| Bra037981.1-P | Field mustard | nucleus | 48.8 | 44.85 |
| CDY33066 | Canola | nucleus | 48.8 | 44.85 |
| Solyc05g009290.2.1 | Tomato | nucleus | 40.4 | 39.45 |
| Bra014359.1-P | Field mustard | nucleus | 47.6 | 36.28 |
| CDY08227 | Canola | nucleus | 47.2 | 35.98 |
| Os12t0193100-03 | Rice | nucleus | 41.2 | 32.91 |
| Solyc07g062110.2.1 | Tomato | nucleus | 39.2 | 30.72 |
| TraesCS5B01G113500.2 | Wheat | nucleus | 39.2 | 30.15 |
| TraesCS5D01G118100.2 | Wheat | nucleus | 39.2 | 30.15 |
| TraesCS5A01G121400.1 | Wheat | nucleus | 38.8 | 29.85 |
| KXG23194 | Sorghum | nucleus | 40.4 | 28.86 |
| OQU78707 | Sorghum | nucleus | 40.0 | 28.65 |
| Zm00001d044699_P002 | Maize | nucleus | 38.8 | 27.71 |
| Solyc07g006260.2.1 | Tomato | mitochondrion, nucleus | 28.4 | 22.83 |
| Solyc09g055700.2.1 | Tomato | nucleus | 27.2 | 21.52 |
| Solyc02g065630.2.1 | Tomato | nucleus | 31.6 | 17.87 |
Protein Annotations
| EnsemblPlants:Solyc03g121500.2.1 | EnsemblPlantsGene:Solyc03g121500.2 | ncoils:Coil | PANTHER:PTHR33405 | PANTHER:PTHR33405:SF2 | SEG:seg |
| UniParc:UPI000276730A | UniProt:K4BMU9 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3:-:69580139..69587093
Molecular Weight (calculated)
28311.0 Da
IEP (calculated)
6.982
GRAVY (calculated)
-0.702
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPSLHPAL LEEELEIQHL EIRRLLGENR RLVEDRIALQ RESAAAKEEV YRMNLAIGDM QAEHEIRSRE LIERGLKLEG DLRATEPLKN EAKQLHVEVQ
101: KLNIMKQDLT GQVQTLTKDL AKLQADIQQI PHFRGEIDGL HQELLRARSA IEYEKKAKIE LMDQRQAMET NLVTMAREVE KLRAELSNSD GRAWAAGGSY
201: GMRYGRHDAS FPAPYGEGYG VHMGAADRGP LYGAASASRG GLEKPQMNRR
101: KLNIMKQDLT GQVQTLTKDL AKLQADIQQI PHFRGEIDGL HQELLRARSA IEYEKKAKIE LMDQRQAMET NLVTMAREVE KLRAELSNSD GRAWAAGGSY
201: GMRYGRHDAS FPAPYGEGYG VHMGAADRGP LYGAASASRG GLEKPQMNRR
001: MSGRNRIHRD IRDSYHDHRD LPPERPFLRG PPLLQPPPPS LLEDLQIQEG EIRRQDAEIR RLLSDNHGLA DDRMVLEREL VAAKEELHRM NLMISDLRAE
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH
Arabidopsis Description
FLXL3Protein FLX-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C717]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.