Factsheet for Solyc02g065630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g106320.2.1
Solyc02g038790.1.1
Solyc02g084080.1.1
Solyc02g084110.1.1
Solyc02g084160.1.1
Solyc02g084200.1.1
Solyc03g115770.2.1
Solyc04g016400.2.1
Solyc06g065650.2.1
Solyc06g069690.2.1
Solyc10g079890.1.1
Solyc12g049230.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67170.1	Solyc12g049230.1.1	AT3G13990.1	21798944
AT1G67170.1	Solyc02g038790.1.1	AT3G51180.1	21798944
AT1G67170.1	Solyc02g084080.1.1	AT3G51180.1	21798944
AT1G67170.1	Solyc02g084110.1.1	AT3G51180.1	21798944
AT1G67170.1	Solyc02g084160.1.1	AT3G51180.1	21798944
AT1G67170.1	Solyc02g084200.1.1	AT3G51180.1	21798944
AT1G67170.1	Solyc06g065650.2.1	AT4G32570.1	21798944
AT1G67170.1	Solyc04g016400.2.1	AT5G04170.1	21798944
AT1G67170.1	Solyc10g079890.1.1	AT5G04170.1	21798944
AT1G67170.1	Solyc03g115770.2.1	AT5G61380.1	21798944
AT1G67170.1	Solyc06g069690.2.1	AT5G61380.1	21798944
AT1G67170.1	Solyc01g106320.2.1	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068308	Potato	plastid	92.99	90.93
VIT_14s0083g00450.t01	Wine grape	mitochondrion	55.66	56.81
KRH01477	Soybean	nucleus	47.06	51.49
CDY12623	Canola	nucleus	34.84	48.58
Os02t0192100-01	Rice	mitochondrion	27.15	48.0
Bra034018.1-P	Field mustard	nucleus	32.58	47.06
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	36.43	46.8
AT1G67170.1	Thale cress	nucleus	38.01	46.8
Bra004207.1-P	Field mustard	nucleus	36.2	46.51
GSMUA_Achr1P19060_001	Banana	cytosol, mitochondrion, nucleus, plastid	45.25	46.19
CDY01786	Canola	cytosol	36.2	45.98
GSMUA_Achr1P15680_001	Banana	endoplasmic reticulum, plasma membrane	21.49	39.92
TraesCS6D01G159700.1	Wheat	nucleus	40.5	38.33
TraesCS6A01G169900.1	Wheat	nucleus	40.27	38.12
HORVU6Hr1G034720.1	Barley	nucleus	38.69	37.58
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	40.05	37.34
CDY54119	Canola	mitochondrion	30.09	36.44
EES06432	Sorghum	mitochondrion	38.24	33.87
Solyc03g121500.2.1	Tomato	cytosol, nucleus	17.87	31.6
Solyc07g062110.2.1	Tomato	nucleus	22.4	31.03
Solyc07g006260.2.1	Tomato	mitochondrion, nucleus	20.59	29.26
Solyc05g009290.2.1	Tomato	nucleus	16.74	28.91
Solyc09g055700.2.1	Tomato	nucleus	16.52	23.1

Protein Annotations

EnsemblPlants:Solyc02g065630.2.1	EnsemblPlantsGene:Solyc02g065630.2	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF5	SEG:seg
UniParc:UPI0001CADDFF	UniProt:K4B6Z5	MapMan:35.1	:	:	:

Description

Protein FLX-like 2 [Source:Projected from Arabidopsis thaliana (AT1G67170) UniProtKB/Swiss-Prot;Acc:Q84TD8]

Coordinates

chr2:-:36790041..36796229

Molecular Weight (calculated)

47603.4 Da

IEP (calculated)

6.748

GRAVY (calculated)

-0.833

Length

442 amino acids

Sequence
(BLAST)

001: MGSKGRGPPP NIRRPPPGPG MMYPDSFGPP THNPPPVDFP PFDRLPPPEI LEQKIGAQHL EMQKLTTENQ RLAATHVTLR RDLAAAQHEL QMLHVQIETV
101: KANREQETKG LSDKISRIEA ELQAAESIKK ELPQAQGEAR TLFAARQELV TKIQMLTQDL QRAHADVLHI PRLLAELESL KKEYQQCRTT YECERKLYSD
201: HLESLQVMEK NYMTMSREVE KLRAELANTS NSDRQTGGPY GGSTGYNEND ATNNYATGQN IYADGYGVYQ GRGSVPTGTN AGGVPAVDSP QVGAQSVPPS
301: NRPPYDTSNM SGYDAQRGIR GPVGHGYEAQ MGSSGPGYDA QRGSGLAAYE AQRGHGYDRG PGYDAQRAAG YEAYRGPGYD AYGAPVYDPS KASNYDASSK
401: GGVATQGQVA PIGNAPPGAA PSPGHIGPGY DASAQGGNPA RR

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.