Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029024 | Potato | mitochondrion | 83.28 | 83.28 |
| VIT_14s0030g01830.t01 | Wine grape | cytosol, mitochondrion | 44.69 | 45.72 |
| KRH18932 | Soybean | mitochondrion | 34.73 | 38.71 |
| Bra010043.1-P | Field mustard | nucleus, peroxisome, plasma membrane, plastid | 24.76 | 36.84 |
| CDX86949 | Canola | mitochondrion, nucleus, peroxisome, plastid | 26.37 | 36.12 |
| CDY00237 | Canola | mitochondrion | 25.72 | 35.56 |
| GSMUA_Achr6P28060_001 | Banana | mitochondrion | 35.05 | 34.28 |
| AT5G61920.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 25.72 | 33.61 |
| Solyc03g121500.2.1 | Tomato | cytosol, nucleus | 22.83 | 28.4 |
| Solyc05g009290.2.1 | Tomato | nucleus | 23.15 | 28.12 |
| Solyc07g062110.2.1 | Tomato | nucleus | 27.97 | 27.27 |
| Os04t0479100-01 | Rice | cytosol | 30.23 | 23.15 |
| Solyc09g055700.2.1 | Tomato | nucleus | 22.83 | 22.47 |
| OQU81803 | Sorghum | nucleus, plastid | 30.55 | 21.44 |
| Solyc02g065630.2.1 | Tomato | nucleus | 29.26 | 20.59 |
| Zm00001d025689_P002 | Maize | cytosol | 30.55 | 19.83 |
| TraesCS6D01G330600.1 | Wheat | mitochondrion | 27.97 | 19.64 |
| TraesCS6A01G347500.1 | Wheat | mitochondrion | 28.3 | 19.43 |
| TraesCS6B01G381000.1 | Wheat | mitochondrion | 28.3 | 19.05 |
| Zm00001d003291_P002 | Maize | mitochondrion, plastid | 29.9 | 18.13 |
Protein Annotations
| EnsemblPlants:Solyc07g006260.2.1 | EnsemblPlantsGene:Solyc07g006260.2 | ncoils:Coil | PANTHER:PTHR33405 | PANTHER:PTHR33405:SF4 | UniParc:UPI000276C588 |
| UniProt:K4CB97 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:1058260..1060637
Molecular Weight (calculated)
34832.5 Da
IEP (calculated)
6.687
GRAVY (calculated)
-0.649
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRQVPAS YGRSLQAPGM VLHEELAAGR RRVDPFPHPE LRESRFAARA AEIEHLAGDH HRLAASYVAL KQEYSVAQRE LQELEEYIKS TQTEGDIQVR
101: LLHDKIAKMD VDLRTMESMR KDVEEAHLEA RSLVSANMEL SGKVHHVMEK LEKAHADVKK LPEMHAELDS LKKEYQELRK TFQYEKGLNI EKVEQMKLTE
201: KELIDMANEV ERLRAQVVIA ERRARGIDPY GHPYLNSNPM YPAPPMHLPA HIDSYQRSHL PAAPGTMGDS TYPYGSSVAV IAQGRTGVPP PPVTDGNVAQ
301: GGNLDAPQGG T
101: LLHDKIAKMD VDLRTMESMR KDVEEAHLEA RSLVSANMEL SGKVHHVMEK LEKAHADVKK LPEMHAELDS LKKEYQELRK TFQYEKGLNI EKVEQMKLTE
201: KELIDMANEV ERLRAQVVIA ERRARGIDPY GHPYLNSNPM YPAPPMHLPA HIDSYQRSHL PAAPGTMGDS TYPYGSSVAV IAQGRTGVPP PPVTDGNVAQ
301: GGNLDAPQGG T
001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
Arabidopsis Description
FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.