CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025689_P002	Maize	cytosol	92.1	85.18
Zm00001d003291_P002	Maize	mitochondrion, plastid	91.2	78.75
Os04t0479100-01	Rice	cytosol	62.98	68.72
TraesCS6D01G330600.1	Wheat	mitochondrion	68.4	68.4
TraesCS6A01G347500.1	Wheat	mitochondrion	68.4	66.89
TraesCS6B01G381000.1	Wheat	mitochondrion	68.4	65.58
VIT_14s0030g01830.t01	Wine grape	cytosol, mitochondrion	27.77	40.46
GSMUA_Achr6P28060_001	Banana	mitochondrion	28.22	39.31
KRH18932	Soybean	mitochondrion	22.57	35.84
Bra010043.1-P	Field mustard	nucleus, peroxisome, plasma membrane, plastid	16.03	33.97
PGSC0003DMT400029024	Potato	mitochondrion	23.25	33.12
CDY00237	Canola	mitochondrion	16.7	32.89
CDX86949	Canola	mitochondrion, nucleus, peroxisome, plastid	16.7	32.6
AT5G61920.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	16.48	30.67
Solyc07g006260.2.1	Tomato	mitochondrion, nucleus	21.44	30.55
EES09236	Sorghum	nucleus	16.03	26.3
KXG36288	Sorghum	mitochondrion	19.19	24.01
EER93206	Sorghum	mitochondrion	16.7	22.91
OQU78707	Sorghum	nucleus	17.16	21.78
KXG23194	Sorghum	nucleus	16.03	20.29
EES06432	Sorghum	mitochondrion	20.32	18.04

Protein Annotations

EnsemblPlants:OQU81803	EnsemblPlantsGene:SORBI_3006G120800	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF4	ProteinID:OQU81803
ProteinID:OQU81803.1	SEG:seg	UniParc:UPI0001CADE02	UniProt:A0A1Z5RDG6	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr6:-:48740301..48743212

Molecular Weight (calculated)

47104.8 Da

IEP (calculated)

6.396

GRAVY (calculated)

-0.530

Length

443 amino acids

Sequence
(BLAST)

001: MAHRGHLDGL TAQAPALMHH GSFAAGKLSS HSPLQSSSTL EMLENKLAMQ TAEVEKLIME NQRLASSHVV LRQDIVDTEK EMQMIRTHLG EVQTETDLQI
101: RDLLERIRLM EADIHSGDAV KKELHQVHME AKRLITERQM LTLDIENVIK ELQKLSASGD GKSLPELLAE LDGLRKEHHN LRSQFEFEKN TNIKQVEQMR
201: TMEMNLITMT KQAEKLRGDV ANAERRAQAA AAQAAAHAAG AQVTASQPGT AQATAVSAAA TDPYAGAYAS YPSAYQQGAQ AAAYQQGAQA AAYQQGAQAG
301: AYQQGAQAGA YQQGAQAGAY QQGAQVGAYQ HGTQAGAYQQ GNQAGAYTYA YDAATAYAYA GYSGYPGYAQ SAVPNYSYAV PPQPSSGATT EAASMYGAAG
401: SAGYPTAQVQ PSSATANAAQ PPPPPPPAAP YPSTYDQTRG AQR

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.