CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88029
EES05438
EES07730
EES09228
EES13033
KXG39164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67170.1	EER88029	AT3G13990.1	21798944
AT1G67170.1	KXG39164	AT3G13990.1	21798944
AT1G67170.1	EES13033	AT3G51180.1	21798944
AT1G67170.1	EES09228	AT5G04170.1	21798944
AT1G67170.1	EES05438	AT5G61380.1	21798944
AT1G67170.1	EES07730	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0192100-01	Rice	mitochondrion	37.07	74.0
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	65.13	68.57
TraesCS6D01G159700.1	Wheat	nucleus	63.73	68.09
HORVU6Hr1G034720.1	Barley	nucleus	61.92	67.91
TraesCS6A01G169900.1	Wheat	nucleus	63.33	67.67
GSMUA_Achr1P19060_001	Banana	cytosol, mitochondrion, nucleus, plastid	39.68	45.73
VIT_14s0083g00450.t01	Wine grape	mitochondrion	37.68	43.42
GSMUA_Achr1P15680_001	Banana	endoplasmic reticulum, plasma membrane	20.24	42.44
CDY12623	Canola	nucleus	25.25	39.75
CDY01786	Canola	cytosol	27.66	39.66
Bra034018.1-P	Field mustard	nucleus	24.05	39.22
KRH01477	Soybean	nucleus	31.66	39.11
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	26.85	38.95
Bra004207.1-P	Field mustard	nucleus	26.85	38.95
Solyc02g065630.2.1	Tomato	nucleus	33.87	38.24
PGSC0003DMT400068308	Potato	plastid	34.47	38.05
AT1G67170.1	Thale cress	nucleus	26.85	37.33
CDY54119	Canola	mitochondrion	21.64	29.59
EES09236	Sorghum	nucleus	14.63	27.04
KXG36288	Sorghum	mitochondrion	18.24	25.71
EER93206	Sorghum	mitochondrion	16.03	24.77
OQU78707	Sorghum	nucleus	14.63	20.92
KXG23194	Sorghum	nucleus	14.43	20.57
OQU81803	Sorghum	nucleus, plastid	18.04	20.32

Protein Annotations

EnsemblPlants:EES06432	EnsemblPlantsGene:SORBI_3004G075200	EntrezGene:8079453	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF5
ProteinID:EES06432	ProteinID:EES06432.1	RefSeq:XP_002453456.1	SEG:seg	unigene:Sbi.21037	UniParc:UPI0001A85C02
UniProt:C5XXC9	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6089504..6093510

Molecular Weight (calculated)

52793.1 Da

IEP (calculated)

8.349

GRAVY (calculated)

-0.710

Length

499 amino acids

Sequence
(BLAST)

001: MSRFKPAAGL PPYHHRALPG PGPGHGQGPV PTAHGMMHRE VRDPYGPPGP GMHLPPPGQG PGPFPYDMLP PPEVLEQKLV AQRGEMQKLA VENDRLAASH
101: ASLRKELAAA QQELQRLQAQ GEAAKAAEEQ EMRGLLDKVG KMEADLKACE NVKVELQQAH AEAQNLVAVR QSMMANVQKL SKDLQRNLGE AQQLRALVAE
201: RDAARQENQH LRNTYDYERK LRVDHSESLQ TMKRNYESMV TELEKLRAEL RDTSNLDRSG FFYNNTTQNA DGISSQLSVG QISYDSGYGS AQARTTPTGL
301: ADPLSGSPGG TGLHSGFDPS RGNAYDGSHV ANFSSSKTGT HDGSRGATGF DALKGSGYDA SKAHLIGQAS ATAAHGGLAG YYGSNQATSA PYAWGQSAST
401: YGSVQVPPSY ASGSNTSYGA AAVRPYGSAQ AQPSYGQTQA PSAYGHTQLP SSFSLAQSQS PFTAAQGSSP YGLAAQPPAY GSGRAGTNAG NYEASHGRK

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.