CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68863
CDX70254
CDX73744
CDX75256
CDX77980
CDX80907
CDX83601
CDX84525
CDX87210
CDX97535
CDY02151
CDY23332
CDY30950
CDY31319
CDY33258
CDY39087
CDY41394
CDY46804
CDY51673
CDY58263
CDY64140
CDY65326
CDY67472

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67170.1	CDX97535	AT3G13990.1	21798944
AT1G67170.1	CDY33258	AT3G13990.1	21798944
AT1G67170.1	CDY39087	AT3G13990.1	21798944
AT1G67170.1	CDY65326	AT3G13990.1	21798944
AT1G67170.1	CDX73744	AT3G51180.1	21798944
AT1G67170.1	CDX77980	AT3G51180.1	21798944
AT1G67170.1	CDX68863	AT4G32570.1	21798944
AT1G67170.1	CDX75256	AT4G32570.1	21798944
AT1G67170.1	CDX83601	AT4G32570.1	21798944
AT1G67170.1	CDY23332	AT4G32570.1	21798944
AT1G67170.1	CDY30950	AT4G32570.1	21798944
AT1G67170.1	CDY51673	AT4G32570.1	21798944
AT1G67170.1	CDX70254	AT5G04170.1	21798944
AT1G67170.1	CDX80907	AT5G04170.1	21798944
AT1G67170.1	CDY41394	AT5G04170.1	21798944
AT1G67170.1	CDY67472	AT5G04170.1	21798944
AT1G67170.1	CDX87210	AT5G61380.1	21798944
AT1G67170.1	CDY02151	AT5G61380.1	21798944
AT1G67170.1	CDY64140	AT5G61380.1	21798944
AT1G67170.1	CDX84525	AT5G64430.1	21798944
AT1G67170.1	CDY31319	AT5G64430.1	21798944
AT1G67170.1	CDY46804	AT5G64430.1	21798944
AT1G67170.1	CDY58263	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12623	Canola	nucleus	71.78	82.65
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	61.92	65.7
CDY01786	Canola	cytosol	60.55	63.51
AT1G67170.1	Thale cress	nucleus	55.89	56.82
VIT_14s0083g00450.t01	Wine grape	mitochondrion	46.3	39.03
Os02t0192100-01	Rice	mitochondrion	25.75	37.6
GSMUA_Achr1P15680_001	Banana	endoplasmic reticulum, plasma membrane	23.84	36.55
KRH01477	Soybean	nucleus	38.9	35.15
GSMUA_Achr1P19060_001	Banana	cytosol, mitochondrion, nucleus, plastid	36.71	30.95
Solyc02g065630.2.1	Tomato	nucleus	36.44	30.09
PGSC0003DMT400068308	Potato	plastid	36.71	29.65
TraesCS6D01G159700.1	Wheat	nucleus	31.23	24.41
HORVU6Hr1G034720.1	Barley	nucleus	30.41	24.4
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	31.51	24.26
TraesCS6A01G169900.1	Wheat	nucleus	30.68	23.98
CDY33066	Canola	nucleus	17.26	23.16
CDY24052	Canola	nucleus	17.26	23.16
CDX98491	Canola	cytosol, mitochondrion, nucleus, peroxisome	19.45	21.85
EES06432	Sorghum	mitochondrion	29.59	21.64
CDX97599	Canola	cytosol, mitochondrion, nucleus, peroxisome	19.18	21.6
CDY00237	Canola	mitochondrion	12.33	20.0
CDX86949	Canola	mitochondrion, nucleus, peroxisome, plastid	12.05	19.38
CDY10713	Canola	mitochondrion	13.42	17.63
CDY51010	Canola	nucleus	13.15	17.27
CDY08227	Canola	nucleus	14.52	16.16

Protein Annotations

EnsemblPlants:CDY54119	EnsemblPlantsGene:GSBRNA2T00013401001	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF5	ProteinID:CDY54119
ProteinID:CDY54119.1	SEG:seg	UniParc:UPI0004EE5E8A	UniProt:A0A078IXP3	MapMan:35.1	:

Description

BnaC02g45440DBnaC02g45440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXP3]

Coordinates

chrLK033280:-:31170..33470

Molecular Weight (calculated)

40579.3 Da

IEP (calculated)

9.602

GRAVY (calculated)

-0.649

Length

365 amino acids

Sequence
(BLAST)

001: MYLLHICRGR SRKKKPSFVS GSGKTLINPN RLDLFSFHEG HHCFRFTTGK LHVGLETLRR RLLILLSPPP HYLFLKLAHT VDQINHLMGS NGIFPPPHHM
101: HRPGLPHPEA FGSVPSFPPQ LMEQKLAAQH GEMQRLAIEN QRLAATHGNL RQELAAAQHE LQMLHSQIGS MKSEGEQRMS GLADKVAKIE SELRKSFRTQ
201: KSRSDVQQVP ALMSELDGLR QEYQQCRATY DYEKKFYNDH IESLQAMEKN YMTMAMEVQK LQARLMNSAN ADRGAGGHYN TAENDASQNG VGYYGDAYQG
301: YIPPPAPGTA TAPNSIVGTA QYPYQGVTQP GGYFPPGPGY YFPRGPPPGS SNNAPYGSAA TNAPR

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.