CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
peroxisome 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010043.1-P	Field mustard	nucleus, peroxisome, plasma membrane, plastid	91.19	99.04
CDY00237	Canola	mitochondrion	96.92	97.78
AT5G61920.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	79.74	76.05
KRH18932	Soybean	mitochondrion	36.56	29.75
VIT_14s0030g01830.t01	Wine grape	cytosol, mitochondrion	37.89	28.29
Solyc07g006260.2.1	Tomato	mitochondrion, nucleus	36.12	26.37
PGSC0003DMT400029024	Potato	mitochondrion	35.68	26.05
GSMUA_Achr6P28060_001	Banana	mitochondrion	32.6	23.27
CDY33066	Canola	nucleus	27.75	23.16
CDY24052	Canola	nucleus	27.31	22.79
CDY10713	Canola	mitochondrion	26.87	21.94
CDY51010	Canola	nucleus	25.99	21.22
CDX98491	Canola	cytosol, mitochondrion, nucleus, peroxisome	28.63	20.0
CDX97599	Canola	cytosol, mitochondrion, nucleus, peroxisome	27.75	19.44
CDY12623	Canola	nucleus	26.43	18.93
Os04t0479100-01	Rice	cytosol	30.4	17.0
OQU81803	Sorghum	nucleus, plastid	32.6	16.7
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	25.11	16.57
CDY01786	Canola	cytosol	24.23	15.8
TraesCS6A01G347500.1	Wheat	mitochondrion	31.28	15.67
TraesCS6D01G330600.1	Wheat	mitochondrion	30.4	15.58
Zm00001d025689_P002	Maize	cytosol	32.6	15.45
CDY08227	Canola	nucleus	22.03	15.24
TraesCS6B01G381000.1	Wheat	mitochondrion	30.84	15.15
Zm00001d003291_P002	Maize	mitochondrion, plastid	33.04	14.62
CDY54119	Canola	mitochondrion	19.38	12.05

Protein Annotations

EnsemblPlants:CDX86949	EnsemblPlantsGene:GSBRNA2T00145767001	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF4	ProteinID:CDX86949
ProteinID:CDX86949.1	SEG:seg	UniParc:UPI0001BA63D6	MapMan:35.1	:	:

Description

BnaC03g52190D

Coordinates

chrLK031848:-:682948..683993

Molecular Weight (calculated)

25357.8 Da

IEP (calculated)

7.038

GRAVY (calculated)

-0.735

Length

227 amino acids

Sequence
(BLAST)

001: MSSRERLGSS KHYSRGMSTS GSSSSRHHET ISSASDHRVS HSDVLENKIA ARAAEIDRLS SDNRKLAASY VALKEDLSLA DREVQGLRAH IVKTETDGEI
101: QIRGALEKIA KLEGIVNNRD NIRRELQSAH IEAHTLARER EELAAQVKAA VKELKKVCLE SEGLESSVQE LERLKEEHQR LREEFDAEKS GNVEKLEQLK
201: EMESNIIGAV KAIEKLRSEI ATARSRA

Best Arabidopsis Sequence Match ( AT5G61920.3 )
(BLAST)

001: MSSRERIGSN HHSRVSQGMS TSGSSSSRHH DTISSTSDPR HLRDHQISLS DILENKIAVQ AAEIDRLSND NRKLASSYVA LKEDLTVADR EVQGLRAHIR
101: KTETDHEIQI RSTLEKIAKM EGMVKNRENI RREVQSAHIE AHRLAREREE LASKVKLGMK DLKKVCLEAE SLEASSQELE RLKEEHQRLR KEFEEEKSGN
201: VEKLAQLKGM ERKIIGAVKA IEKLRSEIST ARNKAVEN

Arabidopsis Description

FLXL4FLX4 [Source:UniProtKB/TrEMBL;Acc:A0A178USJ6]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.