CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10713	Canola	mitochondrion	98.2	98.2
Bra018336.1-P	Field mustard	nucleus	97.84	97.84
AT2G30120.5	Thale cress	plastid	76.62	72.45
GSMUA_Achr10P...	Banana	mitochondrion	38.13	35.33
KRG92122	Soybean	plastid	17.63	35.25
KRH72743	Soybean	mitochondrion	37.41	35.14
KRH17098	Soybean	plastid	35.61	34.86
VIT_06s0004g07170.t01	Wine grape	mitochondrion	38.49	34.08
Zm00001d034618_P003	Maize	extracellular, mitochondrion	32.37	28.3
Zm00001d012984_P002	Maize	mitochondrion	32.37	27.86
EER93206	Sorghum	mitochondrion	32.37	27.86
Solyc09g055700.2.1	Tomato	nucleus	31.65	27.85
TraesCS5B01G486200.1	Wheat	cytosol, mitochondrion, nucleus	32.73	27.0
TraesCS5A01G473300.1	Wheat	cytosol, mitochondrion, nucleus	32.73	26.84
TraesCS5D01G486000.1	Wheat	mitochondrion	32.01	26.41
CDY00237	Canola	mitochondrion	21.22	26.22
CDX86949	Canola	mitochondrion, nucleus, peroxisome, plastid	21.22	25.99
HORVU5Hr1G112380.1	Barley	cytosol	32.37	25.14
Os03t0818000-00	Rice	mitochondrion	32.37	24.13
CDX98491	Canola	cytosol, mitochondrion, nucleus, peroxisome	27.34	23.38
CDY33066	Canola	nucleus	22.66	23.16
CDY24052	Canola	nucleus	22.66	23.16
CDX97599	Canola	cytosol, mitochondrion, nucleus, peroxisome	26.62	22.84
CDY12623	Canola	nucleus	21.22	18.61
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	21.22	17.15
CDY01786	Canola	cytosol	21.22	16.95
CDY08227	Canola	nucleus	18.35	15.55
CDY54119	Canola	mitochondrion	17.27	13.15

Protein Annotations

EnsemblPlants:CDY51010	EnsemblPlantsGene:GSBRNA2T00097997001	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF6	ProteinID:CDY51010
ProteinID:CDY51010.1	SEG:seg	UniParc:UPI0004EB4B05	UniProt:A0A078IIW3	MapMan:35.1	:

Description

BnaC04g54610DBnaC04g54610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIW3]

Coordinates

chrLK032956:+:90642..92051

Molecular Weight (calculated)

30573.9 Da

IEP (calculated)

6.122

GRAVY (calculated)

-0.697

Length

278 amino acids

Sequence
(BLAST)

001: MAGRDRYLPS SSSLRVSESQ LNESDMNRTR SVLLEEKIAA QHREIQSILT DNQKLALAHL GVKDQLNLAK RELARLLEAA AAVKSDTEAK VREVYQNSLR
101: MEAEARVVNG IGAELDQVRS DVQRLAEDRQ KLTAELAMLN GEIAKAKPNS DRAVEVKAEI ESLREEVSKG RAALGLEKKT RASNLRHERG MEKTIDHLNR
201: EIVKLEEELS DLETKAKAAA EAAQTPSPGL VASYGNSDDI YGSQGHQYPE ANGSHQVHGS LDCLPQQPAN NTQHSSVP

Best Arabidopsis Sequence Match ( AT2G30120.5 )
(BLAST)

001: MAGRDRYIPS SAVSTSSSSR LLESQLIESD RNRARSVILE DRIAIQHREI QSLLNDNQRL AVAHIGLKDQ LNVAKRELER LLETAVKVKA EGEAKVREVY
101: QNALRMEAEA RVIDGLGAEL GQVRSDVQRL GSDRQELATE LAMFDDEMAK AKPNSDRAIE VKLEIEILRG EIRKGRAALE LEKKTRASNL HHERGMEKTI
201: DHLNREIVKL EEELVDLETK AREANAAAEA APTPSPGLAA SYGNNTDDIY GGQGRQYPEA NGTHEAYRAS DCLSQDPSTP LQHPLNNTQH SSVL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 275 Blast hits to 241 proteins in 42 species: Archae - 4; Bacteria - 15; Metazoa - 15; Fungi - 4; Plants - 188; Viruses - 0; Other Eukaryotes - 49 ( /.../: NCBI BLink). [Source:TAIR;Acc:AT2G30120]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.