CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68863
CDX70254
CDX73744
CDX75256
CDX77980
CDX80907
CDX83601
CDX84525
CDX87210
CDX97535
CDY02151
CDY23332
CDY30950
CDY31319
CDY33258
CDY39087
CDY41394
CDY46804
CDY51673
CDY58263
CDY64140
CDY65326
CDY67472

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67170.1	CDX97535	AT3G13990.1	21798944
AT1G67170.1	CDY33258	AT3G13990.1	21798944
AT1G67170.1	CDY39087	AT3G13990.1	21798944
AT1G67170.1	CDY65326	AT3G13990.1	21798944
AT1G67170.1	CDX73744	AT3G51180.1	21798944
AT1G67170.1	CDX77980	AT3G51180.1	21798944
AT1G67170.1	CDX68863	AT4G32570.1	21798944
AT1G67170.1	CDX75256	AT4G32570.1	21798944
AT1G67170.1	CDX83601	AT4G32570.1	21798944
AT1G67170.1	CDY23332	AT4G32570.1	21798944
AT1G67170.1	CDY30950	AT4G32570.1	21798944
AT1G67170.1	CDY51673	AT4G32570.1	21798944
AT1G67170.1	CDX70254	AT5G04170.1	21798944
AT1G67170.1	CDX80907	AT5G04170.1	21798944
AT1G67170.1	CDY41394	AT5G04170.1	21798944
AT1G67170.1	CDY67472	AT5G04170.1	21798944
AT1G67170.1	CDX87210	AT5G61380.1	21798944
AT1G67170.1	CDY02151	AT5G61380.1	21798944
AT1G67170.1	CDY64140	AT5G61380.1	21798944
AT1G67170.1	CDX84525	AT5G64430.1	21798944
AT1G67170.1	CDY31319	AT5G64430.1	21798944
AT1G67170.1	CDY46804	AT5G64430.1	21798944
AT1G67170.1	CDY58263	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004207.1-P	Field mustard	nucleus	99.13	99.13
CDY01786	Canola	cytosol	95.35	94.25
CDY12623	Canola	nucleus	75.29	81.7
AT1G67170.1	Thale cress	nucleus	75.0	71.87
CDY54119	Canola	mitochondrion	65.7	61.92
VIT_14s0083g00450.t01	Wine grape	mitochondrion	59.3	47.11
Os02t0192100-01	Rice	mitochondrion	31.98	44.0
KRH01477	Soybean	nucleus	50.87	43.32
GSMUA_Achr1P15680_001	Banana	endoplasmic reticulum, plasma membrane	27.91	40.34
GSMUA_Achr1P19060_001	Banana	cytosol, mitochondrion, nucleus, plastid	49.13	39.03
Solyc02g065630.2.1	Tomato	nucleus	46.8	36.43
PGSC0003DMT400068308	Potato	plastid	46.8	35.62
HORVU6Hr1G034720.1	Barley	nucleus	40.7	30.77
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	41.57	30.17
TraesCS6D01G159700.1	Wheat	nucleus	40.12	29.55
TraesCS6A01G169900.1	Wheat	nucleus	40.12	29.55
CDY33066	Canola	nucleus	22.38	28.31
CDX97599	Canola	cytosol, mitochondrion, nucleus, peroxisome	26.45	28.09
CDX98491	Canola	cytosol, mitochondrion, nucleus, peroxisome	26.45	28.0
CDY24052	Canola	nucleus	22.09	27.94
EES06432	Sorghum	mitochondrion	38.95	26.85
CDY00237	Canola	mitochondrion	16.86	25.78
CDX86949	Canola	mitochondrion, nucleus, peroxisome, plastid	16.57	25.11
CDY10713	Canola	mitochondrion	17.44	21.58
CDY51010	Canola	nucleus	17.15	21.22
CDY08227	Canola	nucleus	18.31	19.21

Protein Annotations

EnsemblPlants:CDX96108	EnsemblPlantsGene:GSBRNA2T00102156001	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF5	ProteinID:CDX96108
ProteinID:CDX96108.1	SEG:seg	UniParc:UPI0004EE22CF	MapMan:35.1	:	:

Description

BnaA07g26230D

Coordinates

chrLK031892:-:1086514..1088406

Molecular Weight (calculated)

37789.6 Da

IEP (calculated)

7.461

GRAVY (calculated)

-0.870

Length

344 amino acids

Sequence
(BLAST)

001: MESQGRHPPP HHLRHPLPIM PPPPSAQPAF PPFNNTLPPL QLMEQKLATQ HGEMQRLAIE NQRLAATHGN LRQELAAAQH ELQMLHSQIG SIKSEGEQRM
101: SGLADKVAKM EAELRKSEAL KMEMQEARGE ARGLVVAREE LMSKVHQLTQ EIQKSRGEVQ QVPALMSELD GLRQEYQQCR ATYDYEKKFY NDHIESLQAM
201: EKNYMTMAME VQKLQAQLMN GRAGGAYGNN TNAENDASGH QNGVGYYDEA YGHQGYVPQP AAGTATAPNP AVPTAQYPYQ GGSQPGYFPP RPGYYFPRGP
301: PPGSYDPTRL PAGPQGGQFP PGSSNNAPYG SAAATGPRGN PSRR

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.