Factsheet for VIT_14s0083g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0252g00130.t01
VIT_03s0097g00600.t01
VIT_04s0008g04950.t01
VIT_04s0023g03180.t01
VIT_04s0043g00960.t01
VIT_09s0002g01530.t01
VIT_17s0000g06570.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67170.1	VIT_04s0043g00960.t01	AT3G13990.1	21798944
AT1G67170.1	VIT_09s0002g01530.t01	AT3G13990.1	21798944
AT1G67170.1	VIT_04s0023g03180.t01	AT3G51180.1	21798944
AT1G67170.1	VIT_04s0008g04950.t01	AT4G32570.1	21798944
AT1G67170.1	VIT_00s0252g00130.t01	AT5G04170.1	21798944
AT1G67170.1	VIT_17s0000g06570.t01	AT5G61380.1	21798944
AT1G67170.1	VIT_03s0097g00600.t01	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01477	Soybean	nucleus	58.89	63.12
AT1G67170.1	Thale cress	nucleus	51.5	62.12
CDY12623	Canola	nucleus	44.34	60.57
Bra034018.1-P	Field mustard	nucleus	42.03	59.48
GSMUA_Achr1P19060_001	Banana	cytosol, mitochondrion, nucleus, plastid	59.35	59.35
Bra004207.1-P	Field mustard	nucleus	47.11	59.3
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	47.11	59.3
CDY01786	Canola	cytosol	47.11	58.62
Solyc02g065630.2.1	Tomato	nucleus	56.81	55.66
Os02t0192100-01	Rice	mitochondrion	32.1	55.6
PGSC0003DMT400068308	Potato	plastid	57.51	55.09
GSMUA_Achr1P15680_001	Banana	endoplasmic reticulum, plasma membrane	30.25	55.04
CDY54119	Canola	mitochondrion	39.03	46.3
HORVU6Hr1G034720.1	Barley	nucleus	45.27	43.08
TraesCS6A01G169900.1	Wheat	nucleus	46.42	43.04
TraesCS6D01G159700.1	Wheat	nucleus	46.42	43.04
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	46.65	42.62
VIT_14s0030g01830.t01	Wine grape	cytosol, mitochondrion	29.79	42.43
EES06432	Sorghum	mitochondrion	43.42	37.68
VIT_10s0003g02200.t01	Wine grape	cytosol, mitochondrion, nucleus	26.1	36.81
VIT_19s0014g00260.t01	Wine grape	cytosol, mitochondrion, nucleus	25.17	35.16
VIT_01s0011g03510.t01	Wine grape	extracellular, plastid	23.09	31.85
VIT_06s0004g07170.t01	Wine grape	mitochondrion	22.4	30.89
VIT_09s0002g02070.t01	Wine grape	mitochondrion	25.64	30.49

Protein Annotations

EntrezGene:100244706	wikigene:100244706	MapMan:35.1	EMBL:AM447089	ProteinID:CAN65241	ProteinID:CAN65241.1
ProteinID:CCB44059	ProteinID:CCB44059.1	ncoils:Coil	UniProt:F6GVS4	EMBL:FN594955	EntrezGene:LOC100244706
wikigene:LOC100244706	PANTHER:PTHR33405	PANTHER:PTHR33405:SF5	TIGR:TC61128	UniParc:UPI0002108959	ArrayExpress:VIT_14s0083g00450
EnsemblPlantsGene:VIT_14s0083g00450	EnsemblPlants:VIT_14s0083g00450.t01	unigene:Vvi.3470	RefSeq:XP_002282805	RefSeq:XP_002282805.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:22528546..22535692

Molecular Weight (calculated)

46506.8 Da

IEP (calculated)

8.700

GRAVY (calculated)

-0.805

Length

433 amino acids

Sequence
(BLAST)

001: MFGWIVLFHQ LKMGSKGRIP PHLRRPLPGP GLMHPDSFVP GIRPPHGVFS PFDMLPPPEV MEQKLAAQHV DMQRLANENQ RLAATHGTLR QELAAAQHEL
101: QMLQAQIGVM KSEREQRMRS LTDKIAKMEA ELKAAEPVKL ELQQARADAQ SLVAARQELI SKVQQLTQDL QRSHSDVQQI PALMAELESL RQEYQHCRAT
201: YDYEKKLYND HLESLQVMEK NYMTMAREVE KLRAELTNTA NMDRRTGGPY GGPTGYNEGE ASGHHPIGHN AYEDGYGVPQ GRAPLPGATG GGVAAAGGGG
301: GGGGTPAYAG PQSGPAASRP GYDGPRGPGY DAPRGPGYDA PRGPGYDPQR GPGYDAQKGP GYDAQRGPAY DGQRGPVYDA PRGTNYDAPT RAAPGPHGQV
401: PSGNNVPYGS ATPPARSGGG YEAAPRGGNP VRR

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.