Factsheet for VIT_10s0003g02200.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19990_001	Banana	cytosol	41.37	67.91
VIT_19s0014g00260.t01	Wine grape	cytosol, mitochondrion, nucleus	59.93	59.35
KXG36288	Sorghum	mitochondrion	55.7	48.31
Zm00001d021587_P002	Maize	mitochondrion	54.72	47.59
TraesCS2A01G226300.1	Wheat	nucleus	52.12	46.24
TraesCS2D01G231800.1	Wheat	mitochondrion	51.47	45.66
Os07t0508200-01	Rice	cytosol, mitochondrion, nucleus, plastid	52.77	45.51
VIT_06s0004g07170.t01	Wine grape	mitochondrion	45.93	44.9
TraesCS2B01G249600.3	Wheat	plastid	51.79	42.86
HORVU2Hr1G047850.4	Barley	mitochondrion	51.47	42.47
VIT_14s0030g01830.t01	Wine grape	cytosol, mitochondrion	38.11	38.49
VIT_01s0011g03510.t01	Wine grape	extracellular, plastid	37.46	36.62
VIT_09s0002g02070.t01	Wine grape	mitochondrion	39.74	33.52
VIT_14s0083g00450.t01	Wine grape	mitochondrion	36.81	26.1

Protein Annotations

EntrezGene:100267569	wikigene:100267569	MapMan:35.1	UniProt:A5B941	EMBL:AM450960	ProteinID:CAN63248
ProteinID:CAN63248.1	ProteinID:CCB55737	ProteinID:CCB55737.1	ncoils:Coil	EMBL:FN595992	EntrezGene:LOC100267569
wikigene:LOC100267569	PANTHER:PTHR33405	PANTHER:PTHR33405:SF7	TIGR:TC57446	UniParc:UPI00015205AB	ArrayExpress:VIT_10s0003g02200
EnsemblPlantsGene:VIT_10s0003g02200	EnsemblPlants:VIT_10s0003g02200.t01	unigene:Vvi.6937	RefSeq:XP_002267059	RefSeq:XP_002267059.1	RefSeq:XP_002267059.3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:3967322..3973350

Molecular Weight (calculated)

33507.9 Da

IEP (calculated)

6.875

GRAVY (calculated)

-0.670

Length

307 amino acids

Sequence
(BLAST)

001: MSGRNRGPPM PIKGGLHEPP FRGRGLGPMP HPALLDEPQF GRGAGGPRPG TLIPHPAAIF EDRLALQHQD IQALLIDNQR LAATHVALKQ EVEAAQHEIK
101: RMAHVAASAQ TEMDLQLREA FEKVMKLEAD LRASDAMRAE VMQVRADIQQ LTAARQELTS QAEGLSQDLN RANLDLQQVP LLKGEIEGMR QELQRARAAI
201: EYEKKGYAEN YEHGQAMEKN LIAMAREMEK LRAELANAEK RARAAAAVGN QIYGGSYGNP ETGYGGNPYP AGYGMNPGQG SAEGVPQYGP GPGSWGTYDM
301: QRAHGHR

Best Arabidopsis Sequence Match ( AT3G14750.1 )
(BLAST)

001: MSGRNRGPPP PSMKGGSYSG LQAPVHQPPF VRGLGGGPVP PPPHPSMIDD SREPQFRVDA RGLPPQFSIL EDRLAAQNQD VQGLLADNQR LAATHVALKQ
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R

Arabidopsis Description

FLXL1Protein FLX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V84]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.