Factsheet for VIT_19s0014g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19990_001	Banana	cytosol	36.77	60.96
VIT_10s0003g02200.t01	Wine grape	cytosol, mitochondrion, nucleus	59.35	59.93
Solyc07g062110.2.1	Tomato	nucleus	61.61	59.87
KRH13877	Soybean	nucleus	59.03	56.48
KRH43428	Soybean	endoplasmic reticulum	58.71	55.32
AT3G14750.1	Thale cress	nucleus, plastid	54.19	50.76
CDX98491	Canola	cytosol, mitochondrion, nucleus, peroxisome	52.9	50.46
CDX97599	Canola	cytosol, mitochondrion, nucleus, peroxisome	52.58	50.31
Bra027313.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	52.26	49.09
Bra027315.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	52.26	48.8
Zm00001d021587_P002	Maize	mitochondrion	48.39	42.49
KXG36288	Sorghum	mitochondrion	48.39	42.37
TraesCS2A01G226300.1	Wheat	nucleus	46.45	41.62
Os07t0508200-01	Rice	cytosol, mitochondrion, nucleus, plastid	47.74	41.57
TraesCS2D01G231800.1	Wheat	mitochondrion	46.13	41.33
HORVU2Hr1G047850.4	Barley	mitochondrion	46.45	38.71
TraesCS2B01G249600.3	Wheat	plastid	46.13	38.54
VIT_06s0004g07170.t01	Wine grape	mitochondrion	37.74	37.26
VIT_14s0030g01830.t01	Wine grape	cytosol, mitochondrion	34.52	35.2
VIT_01s0011g03510.t01	Wine grape	extracellular, plastid	33.23	32.8
VIT_09s0002g02070.t01	Wine grape	mitochondrion	35.16	29.95
VIT_14s0083g00450.t01	Wine grape	mitochondrion	35.16	25.17

Protein Annotations

ArrayExpress:VIT_19s0014g00260	EMBL:FN595229	EnsemblPlants:VIT_19s0014g00260.t01	EnsemblPlantsGene:VIT_19s0014g00260	EntrezGene:100262249	EntrezGene:LOC100262249
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF7
ProteinID:CBI20102	ProteinID:CBI20102.3	RefSeq:XP_002283692	RefSeq:XP_002283692.2	RefSeq:XP_010644064.1	SEG:seg
UniParc:UPI0001BE1A3F	UniProt:E0CS03	wikigene:100262249	wikigene:LOC100262249	MapMan:35.1	:

Description

No Description!

Coordinates

chr19:-:271545..275207

Molecular Weight (calculated)

34376.1 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.646

Length

310 amino acids

Sequence
(BLAST)

001: MSRRDRRPPF PMKDIPHVHE PPFGRGLGPR PHPKLLEGMR GAQLQELQFG MGHRLPPPHP WVIEEHLAVQ QQEIQGLLVD NQGLAATHVA LKQELEAVQQ
101: ELQRMVHFSG MLQADKDVEM RTMHERLAKI EADLCGMEVM KAEVLKVNAD VKELTLARQE LTGKVQVMTQ DLARAKADLQ HASALKEEIE SVKHELQRAR
201: AAIEYEKKGY AENYQHGQLM ENNLISMARE LEKLRAELAN ADKGASAAAS GGNPGYSGNY GNPEAGYAAN PYLTNYGMNP VPAGAESFPQ YGPGPGSWGA
301: YNMQQAQGHR

Best Arabidopsis Sequence Match ( AT3G14750.1 )
(BLAST)

001: MSGRNRGPPP PSMKGGSYSG LQAPVHQPPF VRGLGGGPVP PPPHPSMIDD SREPQFRVDA RGLPPQFSIL EDRLAAQNQD VQGLLADNQR LAATHVALKQ
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R

Arabidopsis Description

FLXL1Protein FLX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V84]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.