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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • mitochondrion 3
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G226300.1 Wheat nucleus 76.4 78.61
TraesCS2D01G231800.1 Wheat mitochondrion 75.84 78.03
KXG36288 Sorghum mitochondrion 75.0 75.42
Zm00001d021587_P002 Maize mitochondrion 74.16 74.79
TraesCS2B01G249600.3 Wheat plastid 75.84 72.78
HORVU2Hr1G047850.4 Barley mitochondrion 75.56 72.31
GSMUA_Achr9P19990_001 Banana cytosol 33.43 63.64
VIT_10s0003g02200.t01 Wine grape cytosol, mitochondrion, nucleus 45.51 52.77
VIT_19s0014g00260.t01 Wine grape cytosol, mitochondrion, nucleus 41.57 47.74
Solyc07g062110.2.1 Tomato nucleus 41.85 46.71
KRH13877 Soybean nucleus 42.13 46.3
KRH43428 Soybean endoplasmic reticulum 42.42 45.9
AT3G14750.1 Thale cress nucleus, plastid 37.92 40.79
CDX98491 Canola cytosol, mitochondrion, nucleus, peroxisome 35.39 38.77
CDX97599 Canola cytosol, mitochondrion, nucleus, peroxisome 35.11 38.58
Bra027313.1-P Field mustard cytosol, mitochondrion, nucleus, peroxisome 35.11 37.88
Bra027315.1-P Field mustard cytosol, mitochondrion, nucleus, peroxisome 35.11 37.65
Os08t0430100-01 Rice mitochondrion 24.72 32.84
Os02t0192100-01 Rice mitochondrion 21.07 30.0
Os03t0818000-00 Rice mitochondrion 30.34 28.95
Os12t0193100-03 Rice nucleus 25.0 28.43
Os04t0479100-01 Rice cytosol 24.16 21.18
Protein Annotations
EMBL:AK069914EnsemblPlants:Os07t0508200-01EnsemblPlantsGene:Os07g0508200EntrezGene:4343340ncoils:CoilPANTHER:PTHR33405
PANTHER:PTHR33405:SF7ProteinID:BAC79593.1ProteinID:BAF21657.1ProteinID:BAT01687.1RefSeq:XP_015647584.1SEG:seg
UniParc:UPI00001B396DUniProt:Q7XIR7MapMan:35.1:::
Description
SKIP interacting protein 30, SKIPa-interacting protein 30, SKIPa-interacting protein 30Similar to SKIP interacting protein 30 (Fragment). (Os07t0508200-01)
Coordinates
chr7:+:19304825..19309468
Molecular Weight (calculated)
39118.0 Da
IEP (calculated)
7.274
GRAVY (calculated)
-0.787
Length
356 amino acids
Sequence
(BLAST)
001: MAGRHRNPPP PSFPRGGGGG VGRGHHPPPP SLHHHRLPPP HHLDDFREPP LLPPHHRLDD FREPHHLPPP HHHHHLDEFG EPPRHHVFAG HGGGAGPPPA
101: PHVVAALEER LGAEIEEAHV LLGQNQRLAA THVALVQEVS AVRHELGRTA RGLAAAQEEG ELRLREVYER SMKMEAELRA VEEMRAELAQ VRLDIQKLGA
201: ARQELMGQVQ GFTQDLARSA VDLQQVAALK AEIQEIRHET QHLRSGIEVE KKGYAESYEQ GQEMQKKLIS VASEVEKLRA EAEKRSRAAV SGGNQVYVGG
301: YGNPKAAYAA NPYNAGYNIN QPHPQANTAD SGSQFGPGST HAPWGAYDMQ RATGRR
Best Arabidopsis Sequence Match ( AT3G14750.1 )
(BLAST)
001: MSGRNRGPPP PSMKGGSYSG LQAPVHQPPF VRGLGGGPVP PPPHPSMIDD SREPQFRVDA RGLPPQFSIL EDRLAAQNQD VQGLLADNQR LAATHVALKQ
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R
Arabidopsis Description
FLXL1Protein FLX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V84]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.