CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97599	Canola	cytosol, mitochondrion, nucleus, peroxisome	96.62	96.91
AT3G14750.1	Thale cress	nucleus, plastid	80.92	79.46
Solyc07g062110.2.1	Tomato	nucleus	54.46	55.49
KRH13877	Soybean	nucleus	54.77	54.94
KRH43428	Soybean	endoplasmic reticulum	54.46	53.8
VIT_19s0014g00260.t01	Wine grape	cytosol, mitochondrion, nucleus	50.46	52.9
GSMUA_Achr9P19990_001	Banana	cytosol	29.85	51.87
KXG36288	Sorghum	mitochondrion	42.46	38.98
Zm00001d021587_P002	Maize	mitochondrion	42.15	38.81
TraesCS2D01G231800.1	Wheat	mitochondrion	41.23	38.73
TraesCS2A01G226300.1	Wheat	nucleus	41.23	38.73
TraesCS2B01G249600.3	Wheat	plastid	40.92	35.85
HORVU2Hr1G047850.4	Barley	mitochondrion	40.92	35.75
Os07t0508200-01	Rice	cytosol, mitochondrion, nucleus, plastid	38.77	35.39
CDY24052	Canola	nucleus	28.0	33.46
CDY33066	Canola	nucleus	27.38	32.72
CDX86949	Canola	mitochondrion, nucleus, peroxisome, plastid	20.0	28.63
CDY10713	Canola	mitochondrion	24.0	28.06
CDY00237	Canola	mitochondrion	19.38	28.0
CDY51010	Canola	nucleus	23.38	27.34
CDY12623	Canola	nucleus	26.46	27.13
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	28.0	26.45
CDY01786	Canola	cytosol	28.0	26.15
CDY08227	Canola	nucleus	24.92	24.7
CDY54119	Canola	mitochondrion	21.85	19.45

Protein Annotations

EnsemblPlants:CDX98491	EnsemblPlantsGene:GSBRNA2T00106123001	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF7	ProteinID:CDX98491
ProteinID:CDX98491.1	SEG:seg	UniParc:UPI0004EDD9EA	MapMan:35.1	:	:

Description

BnaC05g38840D

Coordinates

chrLK031905:-:537613..539405

Molecular Weight (calculated)

36387.6 Da

IEP (calculated)

6.569

GRAVY (calculated)

-0.926

Length

325 amino acids

Sequence
(BLAST)

001: MSGRNRGSYG GLQPPINQPP FVRGLGGHAP PPHPPRPLDD NRELPQFRNH HPQHHHSIIE DRIAAQNQDV QGLLADNQRL AATHVALKQE LEVAQHELQR
101: MMHYIDSLRA EEDIMMREMY DKSRRCEVEL HQVEALRADV QKVRADIKEL TSSRQELTSQ VHLMTQDLGR LTAELQQIPT LTAEIENTKQ ELQRARAAID
201: YEKKGYAENY EHGKVMEQKL VAMARELEKL RAEIANSESR AHATGPVGNP GGVGYGGGYG NHDTAGYAVN PYQPNYAMNP AQAQGGVEGY YPPPYGAPPT
301: AWAGGYDPQQ QQQYYPQQGQ GQGQR

Best Arabidopsis Sequence Match ( AT3G14750.1 )
(BLAST)

001: MSGRNRGPPP PSMKGGSYSG LQAPVHQPPF VRGLGGGPVP PPPHPSMIDD SREPQFRVDA RGLPPQFSIL EDRLAAQNQD VQGLLADNQR LAATHVALKQ
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R

Arabidopsis Description

FLXL1Protein FLX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V84]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.