Factsheet for Solyc07g062110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19990_001	Banana	cytosol	37.3	63.64
VIT_19s0014g00260.t01	Wine grape	cytosol, mitochondrion, nucleus	59.87	61.61
KRH13877	Soybean	nucleus	62.07	61.11
KRH43428	Soybean	endoplasmic reticulum	63.01	61.09
AT3G14750.1	Thale cress	nucleus, plastid	58.31	56.19
CDX97599	Canola	cytosol, mitochondrion, nucleus, peroxisome	56.43	55.56
CDX98491	Canola	cytosol, mitochondrion, nucleus, peroxisome	55.49	54.46
Bra027313.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	56.11	54.24
Bra027315.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	56.11	53.92
KXG36288	Sorghum	mitochondrion	49.53	44.63
TraesCS2A01G226300.1	Wheat	nucleus	47.34	43.64
Zm00001d021587_P002	Maize	mitochondrion	48.28	43.63
TraesCS2D01G231800.1	Wheat	mitochondrion	47.02	43.35
Os07t0508200-01	Rice	cytosol, mitochondrion, nucleus, plastid	46.71	41.85
HORVU2Hr1G047850.4	Barley	mitochondrion	47.34	40.59
TraesCS2B01G249600.3	Wheat	plastid	47.02	40.43
Solyc03g121500.2.1	Tomato	cytosol, nucleus	30.72	39.2
Solyc05g009290.2.1	Tomato	nucleus	28.53	35.55
Solyc09g055700.2.1	Tomato	nucleus	33.86	34.18
Solyc07g006260.2.1	Tomato	mitochondrion, nucleus	27.27	27.97
Solyc02g065630.2.1	Tomato	nucleus	31.03	22.4

Protein Annotations

EnsemblPlants:Solyc07g062110.2.1	EnsemblPlantsGene:Solyc07g062110.2	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF7	SEG:seg
UniParc:UPI000276B47E	UniProt:K4CGP4	MapMan:35.1	:	:	:

Description

Protein FLX-like 1 [Source:Projected from Arabidopsis thaliana (AT3G14750) UniProtKB/Swiss-Prot;Acc:Q93V84]

Coordinates

chr7:-:64921777..64924428

Molecular Weight (calculated)

35465.0 Da

IEP (calculated)

6.690

GRAVY (calculated)

-0.826

Length

319 amino acids

Sequence
(BLAST)

001: MAGRNRGPPL PMKGGPHGGL PPPMHEPQFA RGRLPVPHPA MLEEMRESQF GMGSRPMPPH PAVLEEHLAS QHDEIQGLLV DNQRLAATHV ALKQEVEAAQ
101: YELQRTDHYA RSLRMETDVQ MRELYEKSAK LEMDLQVADG MRSELMRVRS DIKEFTAARQ DLTVEYQRMT QDLSRMTADL QQAPAIKAES EGLKQELQRA
201: RAAIENEKKG YAENYEYGQV MEKKLLAMAR ELEKLRAEVA NAEKRARAAA AVANPGAGYN ANYGNPESGY PGNYYPANYG MNPMNPAHPV QGGAEGYSQY
301: GHGPGAWGGY DVQRAQGPR

Best Arabidopsis Sequence Match ( AT3G14750.1 )
(BLAST)

001: MSGRNRGPPP PSMKGGSYSG LQAPVHQPPF VRGLGGGPVP PPPHPSMIDD SREPQFRVDA RGLPPQFSIL EDRLAAQNQD VQGLLADNQR LAATHVALKQ
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R

Arabidopsis Description

FLXL1Protein FLX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V84]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.