CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13877	Soybean	nucleus	93.31	94.75
GSMUA_Achr9P19990_001	Banana	cytosol	36.17	63.64
Solyc07g062110.2.1	Tomato	nucleus	61.09	63.01
VIT_19s0014g00260.t01	Wine grape	cytosol, mitochondrion, nucleus	55.32	58.71
CDX98491	Canola	cytosol, mitochondrion, nucleus, peroxisome	53.8	54.46
CDX97599	Canola	cytosol, mitochondrion, nucleus, peroxisome	53.19	54.01
AT3G14750.1	Thale cress	nucleus, plastid	53.5	53.17
Bra027313.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	52.89	52.73
Bra027315.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	52.89	52.41
Zm00001d021587_P002	Maize	mitochondrion	46.2	43.06
KXG36288	Sorghum	mitochondrion	46.2	42.94
TraesCS2A01G226300.1	Wheat	nucleus	44.98	42.77
Os07t0508200-01	Rice	cytosol, mitochondrion, nucleus, plastid	45.9	42.42
KRH17098	Soybean	plastid	36.47	42.25
TraesCS2D01G231800.1	Wheat	mitochondrion	44.38	42.2
HORVU2Hr1G047850.4	Barley	mitochondrion	44.98	39.78
TraesCS2B01G249600.3	Wheat	plastid	44.68	39.62
KRH72743	Soybean	mitochondrion	35.56	39.53
KRG92122	Soybean	plastid	16.41	38.85
KRH10004	Soybean	mitochondrion	33.43	38.06
KRH23325	Soybean	nucleus	33.74	33.74
KRH18932	Soybean	mitochondrion	25.23	29.75
KRH01477	Soybean	nucleus	30.09	24.5

Protein Annotations

EMBL:ACUP02004858	EnsemblPlants:KRH43428	EnsemblPlantsGene:GLYMA_08G149000	EntrezGene:100805851	ncoils:Coil	PANTHER:PTHR33405
PANTHER:PTHR33405:SF7	ProteinID:KRH43428	ProteinID:KRH43428.1	SEG:seg	UniParc:UPI00023380EF	UniProt:I1KTH6
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:11424189..11427010

Molecular Weight (calculated)

36184.9 Da

IEP (calculated)

7.441

GRAVY (calculated)

-0.674

Length

329 amino acids

Sequence
(BLAST)

001: MSGRNRGQPL PPPHAAGISP PLHDPLYGPR AHHHHHHHHH LVGPVPPHPH HLLEDFRDSQ LGLGPTRGGS IPLHPAAAII EERLAAQHQD IQGLLGDNQR
101: LAATHVALKQ ELEAARHELQ RVAHFRESLR ADTEARMREL YDKAAQLEAE LRGAEAARTE LLQVRSDVKE LTAVRQDLSG QVQAMTQDLA RMTADAKRVP
201: ALRADVEAMK QELQCARAAI EYEKKGFAEN YEHGQVMEKK LVAMAREMEK LRAEIANAEK RARAAAAAGN PGQGYNANYG TADVGYAGNP YPGIYGMNPV
301: QPGVENFPQY GPGPAAWGAY DMQRVQGHR

Best Arabidopsis Sequence Match ( AT3G14750.1 )
(BLAST)

001: MSGRNRGPPP PSMKGGSYSG LQAPVHQPPF VRGLGGGPVP PPPHPSMIDD SREPQFRVDA RGLPPQFSIL EDRLAAQNQD VQGLLADNQR LAATHVALKQ
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R

Arabidopsis Description

FLXL1Protein FLX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V84]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.