Factsheet for Solyc09g055700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17098	Soybean	plastid	38.61	42.96
VIT_06s0004g07170.t01	Wine grape	mitochondrion	40.51	40.76
KRH72743	Soybean	mitochondrion	36.71	39.19
KRG92122	Soybean	plastid	17.09	38.85
GSMUA_Achr10P...	Banana	mitochondrion	34.18	36.0
Solyc07g062110.2.1	Tomato	nucleus	34.18	33.86
CDY10713	Canola	mitochondrion	28.48	32.37
Bra018336.1-P	Field mustard	nucleus	28.16	32.01
CDY51010	Canola	nucleus	27.85	31.65
Zm00001d012984_P002	Maize	mitochondrion	31.65	30.96
AT2G30120.5	Thale cress	plastid	28.48	30.61
EER93206	Sorghum	mitochondrion	31.01	30.34
Zm00001d034618_P003	Maize	extracellular, mitochondrion	30.38	30.19
HORVU5Hr1G112380.1	Barley	cytosol	32.28	28.49
TraesCS5B01G486200.1	Wheat	cytosol, mitochondrion, nucleus	30.06	28.19
TraesCS5A01G473300.1	Wheat	cytosol, mitochondrion, nucleus	30.06	28.02
TraesCS5D01G486000.1	Wheat	mitochondrion	29.75	27.89
Solyc03g121500.2.1	Tomato	cytosol, nucleus	21.52	27.2
Os03t0818000-00	Rice	mitochondrion	31.65	26.81
Solyc05g009290.2.1	Tomato	nucleus	20.89	25.78
Solyc07g006260.2.1	Tomato	mitochondrion, nucleus	22.47	22.83
Solyc02g065630.2.1	Tomato	nucleus	23.1	16.52

Protein Annotations

EnsemblPlants:Solyc09g055700.2.1	EnsemblPlantsGene:Solyc09g055700.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787	GO:GO:0016788
InterPro:Harbinger_derived_prot	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF6	PFAM:PF04827	SEG:seg
UniParc:UPI000276AF6A	UniProt:K4CT67	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr9:+:43990130..43994614

Molecular Weight (calculated)

36209.7 Da

IEP (calculated)

7.172

GRAVY (calculated)

-0.821

Length

316 amino acids

Sequence
(BLAST)

001: MHNFKWSTVI HTIRNPRSQK KEYFTMNQES SQKDVERTIG VVMTRRKCRH APYTDDSRRR FAPPEAQPQP HLQLQLRIHP SDLIDDREVA QQREIEKLLQ
101: ENRSLAGAHV SLNQELSAIQ HELRLLSSTA ATVKTERDAE VREVYDEARK KESDVCILDE LRVDLARVRS DIQNLVDDRK ELTAKLQNME EDLVKVGSEL
201: QQFPVIKAEM ESMRKEVQRG RAAIDYEKKM HTSNLEYSQA MEKHKITLAS EIEKLHAELA NAEKRARAAA AAAAPSNLNH QISAATPNFT YSANYGNPET
301: GYGENLYPAP YAVHQQ

Best Arabidopsis Sequence Match ( AT3G14750.1 )
(BLAST)

001: MSGRNRGPPP PSMKGGSYSG LQAPVHQPPF VRGLGGGPVP PPPHPSMIDD SREPQFRVDA RGLPPQFSIL EDRLAAQNQD VQGLLADNQR LAATHVALKQ
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R

Arabidopsis Description

FLXL1Protein FLX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V84]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.