Factsheet for Zm00001d034618_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93206	Sorghum	mitochondrion	92.45	91.02
Zm00001d012984_P002	Maize	mitochondrion	89.94	88.54
TraesCS5A01G473300.1	Wheat	cytosol, mitochondrion, nucleus	68.24	64.01
TraesCS5B01G486200.1	Wheat	cytosol, mitochondrion, nucleus	67.61	63.8
TraesCS5D01G486000.1	Wheat	mitochondrion	67.3	63.5
HORVU5Hr1G112380.1	Barley	cytosol	67.61	60.06
Os03t0818000-00	Rice	mitochondrion	68.24	58.18
GSMUA_Achr10P...	Banana	mitochondrion	39.62	42.0
KRH17098	Soybean	plastid	36.79	41.2
KRH72743	Soybean	mitochondrion	37.11	39.86
VIT_06s0004g07170.t01	Wine grape	mitochondrion	38.68	39.17
KRG92122	Soybean	plastid	16.67	38.13
CDY10713	Canola	mitochondrion	29.25	33.45
Bra018336.1-P	Field mustard	nucleus	29.25	33.45
CDY51010	Canola	nucleus	28.3	32.37
AT2G30120.5	Thale cress	plastid	28.62	30.95
Zm00001d021587_P002	Maize	mitochondrion	34.28	30.88
Solyc09g055700.2.1	Tomato	nucleus	30.19	30.38
Zm00001d052473_P001	Maize	nucleus	24.21	28.31
Zm00001d004959_P003	Maize	cytosol	22.96	25.35
Zm00001d044699_P002	Maize	nucleus	23.58	21.43
Zm00001d025689_P002	Maize	cytosol	23.27	15.45
Zm00001d003291_P002	Maize	mitochondrion, plastid	22.01	13.65

Protein Annotations

EMBL:EU970006	EnsemblPlants:Zm00001d034618_P003	EnsemblPlants:Zm00001d034618_T003	EnsemblPlantsGene:Zm00001d034618	EntrezGene:100284881	ncoils:Coil
PANTHER:PTHR33405	PANTHER:PTHR33405:SF6	ProteinID:ONM10787.1	ProteinID:ONM10788.1	SEG:seg	UniParc:UPI000182F052
UniProt:B6TYE1	MapMan:35.1	:	:	:	:

Description

Protein FLC EXPRESSOR

Coordinates

chr1:-:297932748..297939999

Molecular Weight (calculated)

34388.3 Da

IEP (calculated)

7.268

GRAVY (calculated)

-0.514

Length

318 amino acids

Sequence
(BLAST)

001: MAARRGPHVI KLHDPNPPLL GRAPGAAPAA VPASSRDEGL LAQHLRASAA HPAFALIEER LAARDQDIQE LLVDNQRFAA THVALQQQLI AAQHELRAVS
101: VAATRARAER EGEVRSLADQ AAHMEAEARA IAAARAEIDQ VHADVQVLAA ARTDLVNRLQ VLREKLAHKK AEASKTDSVR PQIETMRREI QNGRAAVDFE
201: KKAHSDNLEQ SKAMEKNMIA VASEIERLRG ELANAEKGAT AVNPAAAVGN SGYAAPYGNS ASTYTGMYGN PDATYTAQAY PDAYSTNQGH MHTVANPHYM
301: SQPVPYGQYE SQHTNVQR

Best Arabidopsis Sequence Match ( AT3G14750.1 )
(BLAST)

001: MSGRNRGPPP PSMKGGSYSG LQAPVHQPPF VRGLGGGPVP PPPHPSMIDD SREPQFRVDA RGLPPQFSIL EDRLAAQNQD VQGLLADNQR LAATHVALKQ
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R

Arabidopsis Description

FLXL1Protein FLX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V84]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.