Factsheet for VIT_06s0004g07170.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17098	Soybean	plastid	46.82	51.76
KRH72743	Soybean	mitochondrion	47.45	50.34
KRG92122	Soybean	plastid	20.38	46.04
VIT_10s0003g02200.t01	Wine grape	cytosol, mitochondrion, nucleus	44.9	45.93
GSMUA_Achr10P...	Banana	mitochondrion	42.68	44.67
Solyc09g055700.2.1	Tomato	nucleus	40.76	40.51
Bra018336.1-P	Field mustard	nucleus	34.39	38.85
CDY10713	Canola	mitochondrion	34.39	38.85
Zm00001d034618_P003	Maize	extracellular, mitochondrion	39.17	38.68
CDY51010	Canola	nucleus	34.08	38.49
AT2G30120.5	Thale cress	plastid	35.99	38.44
Zm00001d012984_P002	Maize	mitochondrion	39.17	38.08
VIT_19s0014g00260.t01	Wine grape	cytosol, mitochondrion, nucleus	37.26	37.74
EER93206	Sorghum	mitochondrion	38.22	37.15
TraesCS5B01G486200.1	Wheat	cytosol, mitochondrion, nucleus	37.58	35.01
TraesCS5D01G486000.1	Wheat	mitochondrion	37.26	34.72
TraesCS5A01G473300.1	Wheat	cytosol, mitochondrion, nucleus	37.26	34.51
HORVU5Hr1G112380.1	Barley	cytosol	37.9	33.24
Os03t0818000-00	Rice	mitochondrion	38.53	32.44
VIT_14s0030g01830.t01	Wine grape	cytosol, mitochondrion	30.57	31.58
VIT_01s0011g03510.t01	Wine grape	extracellular, plastid	29.94	29.94
VIT_09s0002g02070.t01	Wine grape	mitochondrion	28.03	24.18
VIT_14s0083g00450.t01	Wine grape	mitochondrion	30.89	22.4

Protein Annotations

ArrayExpress:VIT_06s0004g07170	EMBL:FN594951	EnsemblPlants:VIT_06s0004g07170.t01	EnsemblPlantsGene:VIT_06s0004g07170	EntrezGene:100258756	EntrezGene:LOC100258756
ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF6	ProteinID:CBI15897	ProteinID:CBI15897.3	RefSeq:XP_002278199
RefSeq:XP_002278199.2	SEG:seg	TIGR:TC69189	UniParc:UPI0001BE1136	UniProt:D7SJS1	wikigene:100258756
wikigene:LOC100258756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6:-:7936912..7943110

Molecular Weight (calculated)

34507.6 Da

IEP (calculated)

7.666

GRAVY (calculated)

-0.627

Length

314 amino acids

Sequence
(BLAST)

001: MAGRNHLPPP NALKIREVSS TRAPYPSHHN HHALIEEDRY RHRSGPIPVS AGRYHPAVID ERIVIQHREI QTLLGDNQRL AATHVALKQE LAAAQQEISH
101: LSAAAASVKA ERDAQVREVY ERSLKMEAEV RSIDALNAEL AQVRADVQKL SASRQELAAQ LQTINTDLSV SRSELKEVQA VKDGIENMRK ELQRGRAAIE
201: YEKKTHSNNL EQSEAMGKNM MAMAHEVEKL RAELANAEKR ARAAAAAAAA ANPSPVVHAY AASYGNSDMG YGGSFYHDPY AMHQAHGGPD AGPQYGAGAV
301: PLDLYDMQRP HAHR

Best Arabidopsis Sequence Match ( AT3G14750.1 )
(BLAST)

001: MSGRNRGPPP PSMKGGSYSG LQAPVHQPPF VRGLGGGPVP PPPHPSMIDD SREPQFRVDA RGLPPQFSIL EDRLAAQNQD VQGLLADNQR LAATHVALKQ
101: ELEVAQHELQ RIMHYIDSLR AEEEIMMREM YDKSMRSEME LREVDAMRAE IQKIRADIKE FTSGRQELTS QVHLMTQDLA RLTADLQQIP TLTAEIENTK
201: QELQRARAAI DYEKKGYAEN YEHGKIMEHK LVAMARELEK LRAEIANSET SAYANGPVGN PGGVAYGGGY GNPEAGYPVN PYQPNYTMNP AQTGVVGYYP
301: PPYGPQAAWA GGYDPQQQQQ QQPPPQGQGH R

Arabidopsis Description

FLXL1Protein FLX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V84]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.