Factsheet for VIT_09s0002g02070.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
extracellular 1
nucleus 1
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10004	Soybean	mitochondrion	56.04	70.59
PGSC0003DMT400006407	Potato	mitochondrion, nucleus	53.57	70.14
Solyc03g121500.2.1	Tomato	cytosol, nucleus	47.53	69.2
KRH23325	Soybean	nucleus	59.89	66.26
GSMUA_Achr8P21750_001	Banana	nucleus	47.8	62.14
CDY24052	Canola	nucleus	41.76	55.88
GSMUA_Achr10P...	Banana	cytosol	46.43	55.23
Bra037981.1-P	Field mustard	nucleus	41.21	55.15
CDY33066	Canola	nucleus	41.21	55.15
AT1G55170.1	Thale cress	nucleus	41.76	53.71
VIT_01s0011g03510.t01	Wine grape	extracellular, plastid	40.38	46.82
Os12t0193100-03	Rice	nucleus	35.44	41.21
TraesCS5D01G118100.2	Wheat	nucleus	35.71	40.0
TraesCS5B01G113500.2	Wheat	nucleus	35.71	40.0
VIT_10s0003g02200.t01	Wine grape	cytosol, mitochondrion, nucleus	33.52	39.74
TraesCS5A01G121400.1	Wheat	nucleus	35.44	39.69
Bra014359.1-P	Field mustard	nucleus	35.71	39.63
CDY08227	Canola	nucleus	35.16	39.02
KXG23194	Sorghum	nucleus	35.16	36.57
OQU78707	Sorghum	nucleus	34.62	36.1
VIT_19s0014g00260.t01	Wine grape	cytosol, mitochondrion, nucleus	29.95	35.16
Zm00001d044699_P002	Maize	nucleus	33.24	34.57
VIT_14s0030g01830.t01	Wine grape	cytosol, mitochondrion	28.3	33.88
VIT_06s0004g07170.t01	Wine grape	mitochondrion	24.18	28.03
VIT_14s0083g00450.t01	Wine grape	mitochondrion	30.49	25.64

Protein Annotations

ArrayExpress:VIT_09s0002g02070	EMBL:AM429857	EMBL:FN596494	EnsemblPlants:VIT_09s0002g02070.t01	EnsemblPlantsGene:VIT_09s0002g02070	EntrezGene:100253153
EntrezGene:LOC100253153	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF2	ProteinID:CAN71449	ProteinID:CAN71449.1
ProteinID:CCB59335	ProteinID:CCB59335.1	RefSeq:XP_002278937	RefSeq:XP_002278937.2	SEG:seg	UniParc:UPI0002109FA4
UniProt:F6HY12	wikigene:100253153	wikigene:LOC100253153	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr9:-:1874599..1882691

Molecular Weight (calculated)

41248.9 Da

IEP (calculated)

8.678

GRAVY (calculated)

-0.538

Length

364 amino acids

Sequence
(BLAST)

001: MHPRLRRLRT FHLLASANVK QSLPIGLGMP LQVLMFWLHQ KPIVMEFELF TVWVLERIKN CCGSIESITS RELEMAGRNR FPRDAFDGRR GFPPEGPFLR
101: GPPLPRLPPH PAMLEEEFEM QHAEMRRLFG ENRRLVEDRM ALQQELGVAK EELHRMNLAI GDIRAEQELH SRELIEKGLK LEADLRATEP LKNEAVQLRS
201: EIQKLNNIRQ DLAGQVQNLS QEVARLQADN KQIPLLRAEI EGLHQELMRA RTAVDYEKKG NIELMEQRQA MEKNLVSMAR EVEKLRAELA STDARPWGAG
301: ISGGSYGMKF GSPDGGFPAP YGDGYGAHLG AADKGPFYGS GSASWGGLEK PRATRQWWLN KMAS

Best Arabidopsis Sequence Match ( AT1G55170.1 )
(BLAST)

001: MSGRNRIHRD IRDSYHDHRD LPPERPFLRG PPLLQPPPPS LLEDLQIQEG EIRRQDAEIR RLLSDNHGLA DDRMVLEREL VAAKEELHRM NLMISDLRAE
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH

Arabidopsis Description

FLXL3Protein FLX-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C717]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.