Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24052 | Canola | nucleus | 97.06 | 97.06 |
| AT1G55170.1 | Thale cress | nucleus | 85.29 | 81.98 |
| CDY08227 | Canola | nucleus | 63.6 | 52.74 |
| Solyc03g121500.2.1 | Tomato | cytosol, nucleus | 44.85 | 48.8 |
| PGSC0003DMT400006407 | Potato | mitochondrion, nucleus | 49.26 | 48.2 |
| KRH10004 | Soybean | mitochondrion | 50.74 | 47.75 |
| GSMUA_Achr8P21750_001 | Banana | nucleus | 46.69 | 45.36 |
| KRH23325 | Soybean | nucleus | 51.1 | 42.25 |
| VIT_09s0002g02070.t01 | Wine grape | mitochondrion | 55.15 | 41.21 |
| GSMUA_Achr10P... | Banana | cytosol | 45.22 | 40.2 |
| Os12t0193100-03 | Rice | nucleus | 40.07 | 34.82 |
| TraesCS5B01G113500.2 | Wheat | nucleus | 41.54 | 34.77 |
| TraesCS5A01G121400.1 | Wheat | nucleus | 41.18 | 34.46 |
| TraesCS5D01G118100.2 | Wheat | nucleus | 41.18 | 34.46 |
| KXG23194 | Sorghum | nucleus | 40.07 | 31.14 |
| OQU78707 | Sorghum | nucleus | 39.34 | 30.66 |
| Zm00001d044699_P002 | Maize | nucleus | 37.13 | 28.86 |
| CDY00237 | Canola | mitochondrion | 23.16 | 28.0 |
| CDX86949 | Canola | mitochondrion, nucleus, peroxisome, plastid | 23.16 | 27.75 |
| CDX98491 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 32.72 | 27.38 |
| CDX97599 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 32.35 | 27.16 |
| CDY12623 | Canola | nucleus | 27.57 | 23.66 |
| CDY10713 | Canola | mitochondrion | 23.9 | 23.38 |
| CDY01786 | Canola | cytosol | 29.41 | 22.99 |
| CDY51010 | Canola | nucleus | 23.16 | 22.66 |
| CDX96108 | Canola | cytosol, mitochondrion, nucleus, plastid | 28.31 | 22.38 |
| CDY54119 | Canola | mitochondrion | 23.16 | 17.26 |
Protein Annotations
| EnsemblPlants:CDY33066 | EnsemblPlantsGene:GSBRNA2T00053691001 | ncoils:Coil | PANTHER:PTHR33405 | PANTHER:PTHR33405:SF2 | ProteinID:CDY33066 |
| ProteinID:CDY33066.1 | SEG:seg | UniParc:UPI0004EAE891 | UniProt:A0A078H5E1 | MapMan:35.1 | : |
Description
BnaC06g07130DBnaC06g07130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5E1]
Coordinates
chrLK032305:-:186913..188575
Molecular Weight (calculated)
31680.6 Da
IEP (calculated)
7.957
GRAVY (calculated)
-1.028
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGRDRYHRE VQDPSYHDRR RFTPERPFLR APPPPSLLED LQIQEAEIRR LLSDNHRLAD DRVLLERELG AAKEELHRLN LMVSDLRAEQ DLQAREFSEK
101: RHKLEGDIRA MESYKKEASQ LRGEAQKLSE IKRELSGDVQ ILRKDLVKLQ SDNKQIPRLR AEVEDLQKEL MHARGAIDYE KKEKFELIEQ RQIMEKNMVS
201: MAREVEKLRA ELATVDSRPW GFGGSYGMNL GTMDGAYRGS YGETDGFLGS SERSQYYSHG SGSQKKPRLD RH
101: RHKLEGDIRA MESYKKEASQ LRGEAQKLSE IKRELSGDVQ ILRKDLVKLQ SDNKQIPRLR AEVEDLQKEL MHARGAIDYE KKEKFELIEQ RQIMEKNMVS
201: MAREVEKLRA ELATVDSRPW GFGGSYGMNL GTMDGAYRGS YGETDGFLGS SERSQYYSHG SGSQKKPRLD RH
001: MSGRNRIHRD IRDSYHDHRD LPPERPFLRG PPLLQPPPPS LLEDLQIQEG EIRRQDAEIR RLLSDNHGLA DDRMVLEREL VAAKEELHRM NLMISDLRAE
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH
Arabidopsis Description
FLXL3Protein FLX-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C717]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.